PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4gyoB_

Fold library id	PDB Header	Molecule	Title
c4gyoB_	PDB header: hydrolase	Chain: B: PDB Molecule: response regulator aspartate phosphatase j;	PDBTitle: crystal structure of rap protein complexed with competence and2 sporulation factor

Links to external resources
Added to library: Sat Apr 6 09:19:19 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S E E V A V K L N E W Y K L I R A F E A D Q A E A L K Q E I E Y D L E D M E E N Q D L L L Y F S L M E F R H R I M L D K L M P V K P F S D M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L N E I E S N Q Q K L T G L L E Y Y F Y Y F R G M Y E F K Q K N F I L A I D H Y K H A E E K L E Y V E D E I E K A E F L F K V A E V Y Y H I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T S
T T T
T T G G G
S T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence K Q T Y F S M N Y A S Q A L D I Y T K Y E L Y G R R R V Q C E F I I A G N L T D V Y H H E K A L T H L C S A L E H A R Q L E E A Y M I A A A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T
S T T
T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence Y Y N V G H C K Y S L G D Y K E A E G Y F K T A A A I F E E H N F Q Q A V Q A V F S L T H I Y C K E G K Y D K A V E A Y D R G I K S A A E W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T
T T
T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence E D D M Y L T K F R L I H E L Y L G S G D L N V L T E C F D L L E S R Q L L A D A E D L L H D T A E R F N Q L E H Y E S A A F F Y R R L M N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T S
T T
T T

. . . . . . . . .

Sequence I K K K L A E Q R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	E	E	V	A	V	K	L	N	E	W	Y	K	L	I	R	A	F	E	A	D	Q	A	E	A	L	K	Q	E	I	E	Y	D	L	E	D	M	E	E	N	Q	D	L	L	L	Y	F	S	L	M	E	F	R	H	R	I	M	L	D	K	L	M	P	V	K	P	F	S	D	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	T	T																		T	S																									S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	N	E	I	E	S	N	Q	Q	K	L	T	G	L	L	E	Y	Y	F	Y	Y	F	R	G	M	Y	E	F	K	Q	K	N	F	I	L	A	I	D	H	Y	K	H	A	E	E	K	L	E	Y	V	E	D	E	I	E	K	A	E	F	L	F	K	V	A	E	V	Y	Y	H	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T	T	T	S			T																	T	T														T	T	G	G	G			S																		T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	K	Q	T	Y	F	S	M	N	Y	A	S	Q	A	L	D	I	Y	T	K	Y	E	L	Y	G	R	R	R	V	Q	C	E	F	I	I	A	G	N	L	T	D	V	Y	H	H	E	K	A	L	T	H	L	C	S	A	L	E	H	A	R	Q	L	E	E	A	Y	M	I	A	A	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T																			T	T			S																	T	T																				T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	Y	Y	N	V	G	H	C	K	Y	S	L	G	D	Y	K	E	A	E	G	Y	F	K	T	A	A	A	I	F	E	E	H	N	F	Q	Q	A	V	Q	A	V	F	S	L	T	H	I	Y	C	K	E	G	K	Y	D	K	A	V	E	A	Y	D	R	G	I	K	S	A	A	E	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T																			T	T		T																	T																			T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	E	D	D	M	Y	L	T	K	F	R	L	I	H	E	L	Y	L	G	S	G	D	L	N	V	L	T	E	C	F	D	L	L	E	S	R	Q	L	L	A	D	A	E	D	L	L	H	D	T	A	E	R	F	N	Q	L	E	H	Y	E	S	A	A	F	F	Y	R	R	L	M	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T																T	S																	T	T																			T	T
	.	.	.	.	.	.	.	.	.
Sequence	I	K	K	K	L	A	E	Q	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)