PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4gs5A_

Fold library id	PDB Header	Molecule	Title
c4gs5A_	PDB header: ligase	Chain: A: PDB Molecule: acyl-coa synthetase (amp-forming)/amp-acid ligase ii-like	PDBTitle: the crystal structure of acyl-coa synthetase (amp-forming)/amp-acid2 ligase ii-like protein from dyadobacter fermentans dsm 18053

Links to external resources
Added to library: Sat Sep 15 19:48:15 2012

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence X I W T T G K T L C K T Q K R P R N P Y F A Q A Y D F X E K W L G G A R E F V L H T S G S T G X P K P I T V T R A Q L A A S A A X T G K A L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T G G G T
S S T
S
T T S S T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence S L G P G T R A L V C L N V G Y I A G L X X L V R G X E L D W E L T V T E P T A N P L A G L D H A D F D F V A X V P X Q L Q S I L E N S A T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T
S
T T S T
S
T T T T
S S
S
T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence S G Q V D R L G K V L L G G A P V N H A L A X Q I S D L A X P V Y Q S Y G X T E T V S H V A L K A L N G P E A S E L Y V F L P G I Q Y G V D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G G G G G
S
S S
T
S S
G G G S S
S S T T
S
T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence E R G C L H I S G A V T N G Q T V Q T N D L V E I H G N A F Q W I G R A D N V I N S G G V K I V L D Q I D Q R I A A V F H H L N I G N A F F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S G G G T T
S S G G G T T T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence C W W E P D A K L G Q K L V L V I E N A X P E A L T E R L T A E I R S R V S T Y E N P K H I Y F A K A F A K T Q T D K I D K R A T F Q K L S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T S
S
G G G S
S
S S
B
T T S
B
T

Download: PDB structure FASTA sequence
Hidden Markov model

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	X	I	W	T	T	G	K	T	L	C	K	T	Q	K	R	P	R	N	P	Y	F	A	Q	A	Y	D	F	X	E	K	W	L	G	G	A	R	E	F	V	L	H	T	S	G	S	T	G	X	P	K	P	I	T	V	T	R	A	Q	L	A	A	S	A	A	X	T	G	K	A	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T	G	G	G	T					S	S																T		S									T	T	S	S																						T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	S	L	G	P	G	T	R	A	L	V	C	L	N	V	G	Y	I	A	G	L	X	X	L	V	R	G	X	E	L	D	W	E	L	T	V	T	E	P	T	A	N	P	L	A	G	L	D	H	A	D	F	D	F	V	A	X	V	P	X	Q	L	Q	S	I	L	E	N	S	A	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T			T	T							S		T	T	S														T										S		T	T	T	T		S	S				S																T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	S	G	Q	V	D	R	L	G	K	V	L	L	G	G	A	P	V	N	H	A	L	A	X	Q	I	S	D	L	A	X	P	V	Y	Q	S	Y	G	X	T	E	T	V	S	H	V	A	L	K	A	L	N	G	P	E	A	S	E	L	Y	V	F	L	P	G	I	Q	Y	G	V	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	G	G	G	G	G		S					S	S												T		S	S									G	G	G	S	S								S	S	T	T			S						T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	E	R	G	C	L	H	I	S	G	A	V	T	N	G	Q	T	V	Q	T	N	D	L	V	E	I	H	G	N	A	F	Q	W	I	G	R	A	D	N	V	I	N	S	G	G	V	K	I	V	L	D	Q	I	D	Q	R	I	A	A	V	F	H	H	L	N	I	G	N	A	F	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	S						S	G	G	G	T	T													S	S								G	G	G					T	T																				T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	C	W	W	E	P	D	A	K	L	G	Q	K	L	V	L	V	I	E	N	A	X	P	E	A	L	T	E	R	L	T	A	E	I	R	S	R	V	S	T	Y	E	N	P	K	H	I	Y	F	A	K	A	F	A	K	T	Q	T	D	K	I	D	K	R	A	T	F	Q	K	L	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T	T										S																		S		G	G	G	S		S						S	S			B		T	T	S		B									T