Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4gopC_

Fold library idPDB HeaderMoleculeTitle
c4gopC_PDB header: dna binding protein/dnaChain: C: PDB Molecule: putative uncharacterized protein;PDBTitle: structure and conformational change of a replication protein a2 heterotrimer bound to ssdna


Added to library: Wed Jan 9 18:20:45 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence IYPIEGLSPYQNRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLLDDSGEIKATGFNDAVDRFYPLLQENH
Predicted secondary structure
























SS confidence





































































Known secondary structure (DSSP)


STT

TT

S






SS

SS
TTTT

TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence VYLISKARVNIAKKQFSNLQNEYEITFENSTEIEECTDATDVPEVKYEFVRINELESVEANQQCDVIGIL
Predicted secondary structure





























SS confidence





































































Known secondary structure (DSSP) S


GGG
S


S
TT

S

SSS





B

GGGGGGS
SS


B
 .........150.........160.........170.........180.........190.........200.........210
Sequence DSYGELSEIVSKASQRPVQKRELTLVDQGNRSVKLTLWGKTAETFPTNAGVDEKPVLAFKGVKVGDFGGR
Predicted secondary structure





















SS confidence





































































Known secondary structure (DSSP)




TTT
S

TT
BTSTTSTTSSS

S

TTSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence SLSMFSSSTMLINPDITESHVLRGWYDNDGAHAQFQPYTNGGGAGANMAERRTIVQVKDENLGMSEKPDY
Predicted secondary structure








































SS confidence





































































Known secondary structure (DSSP)

TT
S
SSTTTS

B






TT

SS

TTTTSSSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence FNVRATVVYIKQENLYYTACASEGCNKKVNLDHENNWRCEKCDRSYATPEYRYILSTNVADATGQMWLSG
Predicted secondary structure





























SS confidence





































































Known secondary structure (DSSP)

TT


STT


B
TTS
TTTTSS

TT
 .........360.........370.........380.........390.........400.........410.........420
Sequence FNEDATQLIGMSAGELHKLREESESEFSAALHRAANRMYMFNCRAKMDTFNDTARVRYTISRAAPVDFAK
Predicted secondary structure














SS confidence





































































Known secondary structure (DSSP)
TTS
TT
TTSS
TT

 .........430...
Sequence AGMELVDAIRAYM
Predicted secondary structure
SS confidence












Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D