PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4gnrA_

Fold library id	PDB Header	Molecule	Title
c4gnrA_	PDB header: transport protein	Chain: A: PDB Molecule: abc transporter substrate-binding protein-branched chain	PDBTitle: 1.0 angstrom resolution crystal structure of the branched-chain amino2 acid transporter substrate binding protein livj from streptococcus3 pneumoniae str. canada mdr_19a in complex with isoleucine

Links to external resources
Added to library: Sat Sep 8 15:16:50 2012

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence K T I K I G F N F E E S G S L A A Y G T A E Q K G A Q L A V D E I N A A G G I D G K Q I E V V D K D N K S E T A E A A S V T T N L V T Q S K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T T T
B T T B
T T
T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V S A V V G P A T S G A T A A A V A N A T K A G V P L I S P S A T Q D G L T K G Q D Y L F I G T F Q D S F Q G K I I S N Y V S E K L N A K K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S T T
S S
T T T T T T
T T
S
T S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V V L Y T D N A S D Y A K G I A K S F R E S Y K G E I V A D E T F V A G D T D F Q A A L T K M K G K D F D A I V V P G Y Y N E A G K I V N Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
T T
T S
S
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence A R G M G I D K P I V G G D G F N G E E F V Q Q A T A E K A S N I Y F I S G F S T T V E V S A K A K A F L D A Y R A K Y N E E P S T F A A L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
G G G
S
T T T
S S
S S S S
S S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . .

Sequence A Y D S V H L V A N A A K G A K N S G E I K D N L A T K D F E G V T G Q T S F D A D H N T V K T A Y M M T M N N G K V E A A E V V K P I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S
T T
T T S
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	K	T	I	K	I	G	F	N	F	E	E	S	G	S	L	A	A	Y	G	T	A	E	Q	K	G	A	Q	L	A	V	D	E	I	N	A	A	G	G	I	D	G	K	Q	I	E	V	V	D	K	D	N	K	S	E	T	A	E	A	A	S	V	T	T	N	L	V	T	Q	S	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												S	S	T	T																					T	T		B	T	T	B										T	T															T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	S	A	V	V	G	P	A	T	S	G	A	T	A	A	A	V	A	N	A	T	K	A	G	V	P	L	I	S	P	S	A	T	Q	D	G	L	T	K	G	Q	D	Y	L	F	I	G	T	F	Q	D	S	F	Q	G	K	I	I	S	N	Y	V	S	E	K	L	N	A	K	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S							S														T	T						S	S				T	T	T	T	T	T		T	T					S																	T	S			S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	V	L	Y	T	D	N	A	S	D	Y	A	K	G	I	A	K	S	F	R	E	S	Y	K	G	E	I	V	A	D	E	T	F	V	A	G	D	T	D	F	Q	A	A	L	T	K	M	K	G	K	D	F	D	A	I	V	V	P	G	Y	Y	N	E	A	G	K	I	V	N	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T																	S										T	T													T	S			S						S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	A	R	G	M	G	I	D	K	P	I	V	G	G	D	G	F	N	G	E	E	F	V	Q	Q	A	T	A	E	K	A	S	N	I	Y	F	I	S	G	F	S	T	T	V	E	V	S	A	K	A	K	A	F	L	D	A	Y	R	A	K	Y	N	E	E	P	S	T	F	A	A	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T			S						G	G	G		S									T	T	T			S						S			S	S	S	S																	S	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Sequence	A	Y	D	S	V	H	L	V	A	N	A	A	K	G	A	K	N	S	G	E	I	K	D	N	L	A	T	K	D	F	E	G	V	T	G	Q	T	S	F	D	A	D	H	N	T	V	K	T	A	Y	M	M	T	M	N	N	G	K	V	E	A	A	E	V	V	K	P	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T	T		S	S																T	T							T	T	S													T	T