PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4gmkB_

Fold library id	PDB Header	Molecule	Title
c4gmkB_	PDB header: isomerase	Chain: B: PDB Molecule: ribose-5-phosphate isomerase a;	PDBTitle: crystal structure of ribose 5-phosphate isomerase from the probiotic2 bacterium lactobacillus salivarius ucc118

Links to external resources
Added to library: Sat Sep 1 14:18:27 2012

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence D E L K Q L V G T K A V E W I K D G M I V G L G T G S T V K Y M V D A L G K R V N E E G L D I V G V T T S I R T A E Q A K S L G I V I K D I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G
T T
S
S S T T
G

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D E V D H I D L T I D G A D E I S S D F Q G I K G G G A A L L Y E K I V A T K S N K N M W I V D E S K M V D D L G Q F P L P V E V I P Y G S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G S S
S
T T
T T S
G G G B
S S S
S S
S T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence G T V F K R F E E K G L N P E F R K N E D G S L L H T D S D N Y I I D L H L G K I E N P K E L G D Y L I N Q V G V V E H G L F L D I V N T V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
B
T T S S B
T T S
S
S
T S T T S
S

. . . . . . . . . 220 . . . .

Sequence I V G R Q D G P E V L E A R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	D	E	L	K	Q	L	V	G	T	K	A	V	E	W	I	K	D	G	M	I	V	G	L	G	T	G	S	T	V	K	Y	M	V	D	A	L	G	K	R	V	N	E	E	G	L	D	I	V	G	V	T	T	S	I	R	T	A	E	Q	A	K	S	L	G	I	V	I	K	D	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												G	G	G			T	T								S																										S	S										T	T						G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	E	V	D	H	I	D	L	T	I	D	G	A	D	E	I	S	S	D	F	Q	G	I	K	G	G	G	A	A	L	L	Y	E	K	I	V	A	T	K	S	N	K	N	M	W	I	V	D	E	S	K	M	V	D	D	L	G	Q	F	P	L	P	V	E	V	I	P	Y	G	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	S	S										S				T	T							T	T	S																					G	G	G	B		S	S	S		S	S								S	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	G	T	V	F	K	R	F	E	E	K	G	L	N	P	E	F	R	K	N	E	D	G	S	L	L	H	T	D	S	D	N	Y	I	I	D	L	H	L	G	K	I	E	N	P	K	E	L	G	D	Y	L	I	N	Q	V	G	V	V	E	H	G	L	F	L	D	I	V	N	T	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T							B		T	T	S	S	B				T	T	S									S			S											T	S	T	T					S				S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Sequence	I	V	G	R	Q	D	G	P	E	V	L	E	A	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T