PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4gmjE_

Fold library id	PDB Header	Molecule	Title
c4gmjE_	PDB header: rna binding protein	Chain: E: PDB Molecule: ccr4-not transcription complex subunit 1;	PDBTitle: structure of human not1 mif4g domain co-crystallized with caf1

Links to external resources
Added to library: Sat Oct 6 12:48:12 2012

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence H M L E E N I Q E K I A F I F N N L S Q S N M T Q K V E E L K E T V K E E F M P W V S Q Y L V M K R V S I E P N F H S L Y S N F L D T L K N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S
T T T S
G G G T T T T
S T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence P E F N K M V L N E T Y R N I K V L L T S D K A A A N F S D R S L L K N L G H W L G M I T L A K N K P I L H T D L D V K S L L L E A Y V K G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
T T T
T G G G T
T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence Q Q E L L Y V V P F V A K V L E S S I R S V V F R P P N P W T M A I M N V L A E L H Q E H D L K L N L K F E I E V L C K N L A L D I N E L K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G G G
T T T S T T
S S S
T T
G G G S

. . . . . . . . . 220 . . . . . . . . .

Sequence P G N L L K D K D R L K N L D E Q L S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T S
T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	H	M	L	E	E	N	I	Q	E	K	I	A	F	I	F	N	N	L	S	Q	S	N	M	T	Q	K	V	E	E	L	K	E	T	V	K	E	E	F	M	P	W	V	S	Q	Y	L	V	M	K	R	V	S	I	E	P	N	F	H	S	L	Y	S	N	F	L	D	T	L	K	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S														S			T	T	T												S		G	G	G												T	T	T	T		S	T	T												T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	P	E	F	N	K	M	V	L	N	E	T	Y	R	N	I	K	V	L	L	T	S	D	K	A	A	A	N	F	S	D	R	S	L	L	K	N	L	G	H	W	L	G	M	I	T	L	A	K	N	K	P	I	L	H	T	D	L	D	V	K	S	L	L	L	E	A	Y	V	K	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																				T	S				T	T	T																		T	G	G	G	T					T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Q	Q	E	L	L	Y	V	V	P	F	V	A	K	V	L	E	S	S	I	R	S	V	V	F	R	P	P	N	P	W	T	M	A	I	M	N	V	L	A	E	L	H	Q	E	H	D	L	K	L	N	L	K	F	E	I	E	V	L	C	K	N	L	A	L	D	I	N	E	L	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																G	G	G	G	G		T	T	T	S	T	T																		S	S	S															T	T			G	G	G	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Sequence	P	G	N	L	L	K	D	K	D	R	L	K	N	L	D	E	Q	L	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	T	T	S							T