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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c4gl8B_

Fold library idPDB HeaderMoleculeTitle
c4gl8B_PDB header: protein transportChain: B: PDB Molecule: oligopeptide abc transporter oppaiv;PDBTitle: x-ray crystal structure of a periplasmic oligopeptide-binding2 protein/oligopeptide abc transporter(oppaiv) from borrelia3 burgdorferi


Added to library: Sat Sep 22 15:13:43 2012
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence KLVFKLNIGSEPATLDAQLINDTVGSGIVSQMFLGILDGDPRTGGYRPGLAKSWDISDDGVVYTFHLRDN
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Known secondary structure (DSSP)


SS

S


TTT

STTT


S
TTTSSSS
TTS

TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence LVWSDGVSITAEGIRKSYLRILDKETGSSFVNMIKSVIKNAEEYFDGKANESELGIKALDEKTLEITLKS
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Known secondary structure (DSSP)
B
TTS
B

TSGGG

TTTTBTTTTSS
GGGSSTTBSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence PKPYFLDMLVHQTFIPVPMHVIEKYGQRWTDPENMVVSGPFKLKSRVLNEKVVLEKNNKYYNSKDVVLDS
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Known secondary structure (DSSP)

TTTTSGGGS


GGGTTSTTT


SSSTTT
TTSTTGGG


S
 .........220.........230.........240.........250.........260.........270.........280
Sequence IIFFVTDNSITAYNMYLNDELDAIFKNVPPDLLKDLKLRDDYYSMGINSTSFYSLNMKVKPLDNVKVRKA
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Known secondary structure (DSSP)

S
TTS
SS


GGGTTSTT
TTSTTTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence LSFAIDRKTLTESVLNDSSIPTRRATPDYIDYSYKSNLSLFDAEMAKKLLADAGYPNGNNFPLLKVKYNT
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Known secondary structure (DSSP) TS
TTT
S


S
SS

BTTB






S

TT
GGGTT



S
 .........360.........370.........380.........390.........400.........410.........420
Sequence SDSQRKIAEFIQNQWKKNLNINVQLENEEWSTYINSRVNGNYEIIRSGWSGDYADPMTFLSIFQTENTSF
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Known secondary structure (DSSP)





T

S
SSSSTGGGSGGGGGG
 .........430.........440.........450.........460.........470.........480.........490
Sequence SSYGYSNSEYDELLIKSDNERDIFKRQEILKKAEAIIIERDFPAVFLNITSSSYLFRNDKWKGWEPNISE
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Known secondary structure (DSSP) SSTT


T


TT
S
TTTS



TT
 .........500
Sequence RFNLSEIKPI
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Known secondary structure (DSSP)


GGG


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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