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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4gklA_

Fold library idPDB HeaderMoleculeTitle
c4gklA_PDB header: hydrolaseChain: A: PDB Molecule: alpha-amylase;PDBTitle: crystal structure of a noncanonic maltogenic alpha-amylase amyb from2 thermotoga neapolitana


Added to library: Sat Mar 2 08:47:42 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MNLKNLIIYEAFARAYPGEKGKKFLSLEKDLERLKGMGINTVWLMPIHPTGVEGRKGTLGSPYAIRDYYE
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Known secondary structure (DSSP)

GGG


GGGSSS
TT
TT




S
B
STT

TTT

TTSBS
TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence IDLLIGTKGDFKKFVKRAHELNMYVLMDMVLNHAAVDNVLVKKHPEWFLRDENGNPTRKVPSDVVDFDYS
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Known secondary structure (DSSP)

TTT

TT


STT

GGGB
B
TTS
B

S



B
TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence NGELREYMINMMRYWVEEFDVDGFRCDVAGLVPLDFWLQARKNLDPVKRLIWISETHDPYMYQAFDITYD
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Known secondary structure (DSSP)





TTT

TTT





GGGGGT
S
 .........220.........230.........240.........250.........260.........270.........280
Sequence YDGYYRFRDFIEGKNSLREYIDFLRMQDHMYPRGYIKMRFLENHDQPRVAKFLSRESLMHWIAFLFTVKG
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Known secondary structure (DSSP) STTSS
GGGGS
TT

S

TTS

GGGTS
SSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence VPLVHNGQEYALKEDLDIFNEYTLPIPGEENEIFSLHRKLAHYRYKTNVFSNGEMIFIRNDQPERVISYL
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Known secondary structure (DSSP) TTGGGT






SS





S




SS

BS
TTT
 .........360.........370.........380.........390.........400.........410.........420
Sequence WRHGNRFILCVLNPLLENTSVTLDFSGIWENICIHSKNVFNDDIVRVSVKNSRAKIKVGREPLILSFVLY
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Known secondary structure (DSSP) SSS
TT
S


SS
SSTTTTSSS
SS



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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