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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4gfhA_

Fold library idPDB HeaderMoleculeTitle
c4gfhA_PDB header: isomerase/dnaChain: A: PDB Molecule: dna topoisomerase 2;PDBTitle: topoisomerase ii-dna-amppnp complex


Added to library: Sat Oct 6 13:04:16 2012
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SASDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNAADNKV
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Known secondary structure (DSSP)
S




GGGTT


S
TTTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence RDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDEKKVTGGRNGYGA
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Known secondary structure (DSSP)
TT

TTTT
SS



SB
TTT
SBSSS

S



SS



S

SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence KLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPPKITSYKKGPSYTKVTFKPDLTRFGMKELDNDIL
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Known secondary structure (DSSP) TTTTTTTTT




SS



T
SS

 .........220.........230.........240.........250.........260.........270.........280
Sequence GVMRRRVYDINGSVRDINVYLNGKSLKIRNFKNYVELYLKSLIPTILYERINNRWEVAFAVSDISFQQIS
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Known secondary structure (DSSP) SSS
SS
B



SGGGTTT


S
TT
SSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence FVNSIATTMGGTHVNYITDQIVKKISEILKKKKKKSVKSFQIKNNMFIFINCLIENPAFTSQTKEQLTTR
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Known secondary structure (DSSP) SS
TTSSS


TT

SS

BSSTT




 .........360.........370.........380.........390.........400.........410.........420
Sequence VKDFGSRCEIPLEYINKIMKTDLATRMFEIADANESRITNYPKLEDANKAGTKEGYKCTLVLTEGDSALS
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Known secondary structure (DSSP) GGGSSS




TTSTT





S
TT
B

TTTTTTTTTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence LAVAGLAVVGRDYYGCYPLRGKMLNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMIMT
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Known secondary structure (DSSP)
STT
SS



TT


TT


SS



GGGSS
S
 .........500.........510.........520.........530.........540.........550.........560
Sequence DQDHDGSHIKGLIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDYEKWREEESHKF
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Known secondary structure (DSSP)
SSSTTSTTSTT



S
SSS

SSTGGGS
 .........570.........580.........590.........600.........610.........620.........630
Sequence TWKQKYYTSLAQEVREYFSNLDRHLKIFHSLQGNDKDYIDLAFSKKKADDRKEWLRQYEPGTVLDPTLKE
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Known secondary structure (DSSP)




T
TTT


TTT
GGG

TT



SS
S
 .........640.........650.........660.........670.........680.........690.........700
Sequence IPISDFINKELILFSLADNIRSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTAYHHGEQ
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Known secondary structure (DSSP) TS
BTTT


TTTTS
TT

S
 .........710.........720.........730.........740.........750.........760.........770
Sequence SLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQED
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Known secondary structure (DSSP)

STTS
TT
SB

BS



TTTTTTT


TTT

B
TTS
GGGTTTS
T
 .........780.........790.........800.........810.........820.........830.........840
Sequence EKTVEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEELEQMHPWFRGWTGTIEEI
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Known secondary structure (DSSP) TS



SS
STTTT

SS


B
TT






B

TT



 .........850.........860.........870.........880.........890.........900.........910
Sequence EPLRYRMYGRIEQIGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHDDNIKFIITLSP
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Known secondary structure (DSSP) STT

TT

TT



SSS



S

SSS



 .........920.........930.........940.........950.........960.........970.........980
Sequence EEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWE
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Known secondary structure (DSSP)
TT


S


TTS

SS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence VEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFPRFNKEGKPYYGSEELYGTYEYLLGMRIWSLT
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Known secondary structure (DSSP) TTS


SSS
TT


SSS




TTT
BTSS
GGGGS
 .........1060.........1070.........1080.........1090.........1100..
Sequence KERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRDAEAR
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Known secondary structure (DSSP) T

T


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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