PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4gd5B_

Fold library id	PDB Header	Molecule	Title
c4gd5B_	PDB header: transport protein	Chain: B: PDB Molecule: phosphate abc transporter, phosphate-binding protein;	PDBTitle: x-ray crystal structure of a putative phosphate abc transporter2 substrate-binding protein with bound phosphate from clostridium3 perfringens

Links to external resources
Added to library: Sat Aug 18 14:56:18 2012

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence N S V S I S G S T S V G P V X E A E A E A F K T K K P D V S I E I N Q I G S S A G I K N A X E G V S E I G X A S R D L K G E E K Q A G L K E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
T T
T S S S S S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V E I A Y D G I A L I T H K N N P V K D L T L V Q I K D I Y T G K I T N W K E L G G N D A P I V V V S R E D G S G T R D A F Q E I V G F K A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
T T S
B G G G G T S
S S B
T T
T
G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence E E L T V N S Q I S D G S G N I K S L V Q G N E N A I G Y I S F S Y V D D S V S A V K V D G V E A T P E N V L N K S Y K V S R P F L A V Y K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G S
T T
S S
T T G G G
T T
T T B
T T
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . .

Sequence E E N L T E S G K S F I D F I L S E E G Q D I V A K E H L I K V K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
S T T
B

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	N	S	V	S	I	S	G	S	T	S	V	G	P	V	X	E	A	E	A	E	A	F	K	T	K	K	P	D	V	S	I	E	I	N	Q	I	G	S	S	A	G	I	K	N	A	X	E	G	V	S	E	I	G	X	A	S	R	D	L	K	G	E	E	K	Q	A	G	L	K	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T	T																T	T																				T	S	S	S					S	S								T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	E	I	A	Y	D	G	I	A	L	I	T	H	K	N	N	P	V	K	D	L	T	L	V	Q	I	K	D	I	Y	T	G	K	I	T	N	W	K	E	L	G	G	N	D	A	P	I	V	V	V	S	R	E	D	G	S	G	T	R	D	A	F	Q	E	I	V	G	F	K	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T	T		S														T	T	S			B	G	G	G	G	T	S		S	S	B								T	T												T			G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	E	E	L	T	V	N	S	Q	I	S	D	G	S	G	N	I	K	S	L	V	Q	G	N	E	N	A	I	G	Y	I	S	F	S	Y	V	D	D	S	V	S	A	V	K	V	D	G	V	E	A	T	P	E	N	V	L	N	K	S	Y	K	V	S	R	P	F	L	A	V	Y	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	S		T	T					S	S												T	T							G	G	G			T	T							T	T	B									T	T		S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Sequence	E	E	N	L	T	E	S	G	K	S	F	I	D	F	I	L	S	E	E	G	Q	D	I	V	A	K	E	H	L	I	K	V	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	T														S										T	T		B