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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4gd3T_

Fold library idPDB HeaderMoleculeTitle
c4gd3T_PDB header: oxidoreductase/electron transportChain: T: PDB Molecule: hydrogenase-1 small chain;PDBTitle: structure of e. coli hydrogenase-1 in complex with cytochrome b


Added to library: Wed Jan 9 14:33:09 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYIL
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Known secondary structure (DSSP)



B

ST
TTTTTTTT
S

TTTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence AVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI
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Known secondary structure (DSSP) SB
B
SGGGTTSTTTTT
TGGGSTT
TT
B

GGGT

SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence IKVPGCPPIPDVMSAIITYMVTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKG
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Known secondary structure (DSSP)
SSS


S


B
TTS
BSSBGGGS
TTT
B

STTSTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence YCLYKMGCKGPTTYNACSSTRWNDGVSFCIQSGHGCLGCAENGFWDRGSFYSRVVDIPQMGTHSTADTVG
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Known secondary structure (DSSP)
B
GGGT

GGG
B
STTTT
BTTTTB
TTTTT




TTSTTGGGSS
TT
SS
B
GGG
SS
B
 .........290.........300
Sequence LTALGVVAAAVGVHAVASAV
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Known secondary structure (DSSP) TT



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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