PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4g8kA_

Fold library id	PDB Header	Molecule	Title
c4g8kA_	PDB header: hydrolase	Chain: A: PDB Molecule: 2-5a-dependent ribonuclease;	PDBTitle: intact sensor domain of human rnase l in the inactive signaling state

Links to external resources
Added to library: Sat Nov 3 16:52:24 2012

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A A V E D N H L L I K A V Q N E D V D L V Q Q L L E G G A N V N F Q E E E G G W T P L H N A V Q M S R E D I V E L L L R H G A D P V L R K K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T
T T
T T T
T T
T T
T T
T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence N G A T P F I L A A I A G S V K L L K L F L S K G A D V N E C D F Y G F T A F M E A A V Y G K V K A L K F L Y K R G A N V N L R R K T K L R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T
T T T
T T
B
T T
B T T
T T
T T
T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence K G G A T A L M D A A E K G H V E V L K I L L D E M G A D V N A C D N M G R N A L I H A L L S S D D S D V E A I T H L L L D H G A D V N V R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S
T
S
T T
T T S
S
T T T T T
T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence G E R G K T P L I L A V E K K H L G L V Q R L L E Q E H I E I N D T D S D G K T A L L L A V E L K L K K I A E L L C K R G A S T D C G D L V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G
T T
T S T T
T T
B
T T S
B T T
T T S
S S T T

. . . . . . . . . 290 . . . . . . . . . 300 . .

Sequence M T A R R N Y D H S L V K V L L S H G A K E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	A	V	E	D	N	H	L	L	I	K	A	V	Q	N	E	D	V	D	L	V	Q	Q	L	L	E	G	G	A	N	V	N	F	Q	E	E	E	G	G	W	T	P	L	H	N	A	V	Q	M	S	R	E	D	I	V	E	L	L	L	R	H	G	A	D	P	V	L	R	K	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															T	T												T			T	T				T	T	T											T	T											T	T			T	T				T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	N	G	A	T	P	F	I	L	A	A	I	A	G	S	V	K	L	L	K	L	F	L	S	K	G	A	D	V	N	E	C	D	F	Y	G	F	T	A	F	M	E	A	A	V	Y	G	K	V	K	A	L	K	F	L	Y	K	R	G	A	N	V	N	L	R	R	K	T	K	L	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T												T										T	T	T			T	T		B		T	T			B								T	T											T	T			T	T								T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	K	G	G	A	T	A	L	M	D	A	A	E	K	G	H	V	E	V	L	K	I	L	L	D	E	M	G	A	D	V	N	A	C	D	N	M	G	R	N	A	L	I	H	A	L	L	S	S	D	D	S	D	V	E	A	I	T	H	L	L	L	D	H	G	A	D	V	N	V	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T		S											T												S				T	T				T	T	S											S		T	T	T											T	T			T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	G	E	R	G	K	T	P	L	I	L	A	V	E	K	K	H	L	G	L	V	Q	R	L	L	E	Q	E	H	I	E	I	N	D	T	D	S	D	G	K	T	A	L	L	L	A	V	E	L	K	L	K	K	I	A	E	L	L	C	K	R	G	A	S	T	D	C	G	D	L	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		G	G	G										T	T										T	S	T	T			T	T		B		T	T	S		B								T	T										T	T	S		S	S	T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Sequence	M	T	A	R	R	N	Y	D	H	S	L	V	K	V	L	L	S	H	G	A	K	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T											T	T