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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4g7oN_

Fold library idPDB HeaderMoleculeTitle
c4g7oN_PDB header: transcription, transferase/dnaChain: N: PDB Molecule: dna-directed rna polymerase subunit beta';PDBTitle: crystal structure of thermus thermophilus transcription initiation2 complex containing 2 nt of rna


Added to library: Wed Jan 9 19:44:43 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence KEVRKVRIALASPEKIRSWSYGEVEKPETINYRTLKPERDGLFDERIFGPIKDYECACGKYKRQRFEGKV
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SSB


S

B
TTT

B
TTSTT
TTTT

SSTT

SSSSS
TTTTTT
B
 .........80.........90.........100.........110.........120.........130.........140
Sequence CERCGVEVTKSIVRRYRMGHIELATPAAHIWFVKDVPSKIGTLLDLSATELEQVLYFSKYIVLDPKGAIL
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Known secondary structure (DSSP)
TTT

B
S
GGGGGT


SSS
TT

TTSS
TT
B
 .........150.........160.........170.........180.........190.........200.........210
Sequence NGVPVEKRQLLTDEEYRELRYGKQETYPLPPGVDALVKDGEEVVKGQELAPGVVSRLDGVALYRFPRRVR
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Known secondary structure (DSSP) SSSB

TT





TT


SS
TT

TT
TT
SS
S
 .........220.........230.........240.........250.........260.........270.........280
Sequence VEYVKKERAGLRLPLAAWVEKEAYKPGEILAELPEPYLFRAEEEGVVELKELEEGAFLVLRREDEPVATY
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Known secondary structure (DSSP) TTTB


S
B
TT

SS

SS

SSSTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence FLPVGMTPLVVHGEIVEKGQPLAEAKGLLRMPRQVRAAQVEAEEEGETVYLTLFLEWTEPKDYRVQPHMN
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Known secondary structure (DSSP)

S
SS

TT


TTTT

TT
 .........360.........370.........380.........390.........400.........410.........420
Sequence VVVPEGARVEAGDKIVAAIDPEEEVIAEAEGVVHLHEPASILVVKARVYPFEDDVEVSTGDRVAPGDVLA
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Known secondary structure (DSSP)
S
TT
TT
BS
SSSTT

B

SS



SS
BSS
TT

TT
 .........430.........440.........450.........460.........470.........480.........490
Sequence DGGKVKSDVYGRVEVDLVRNVVRVVESYDIDARMGAEAIQQLLKELDLEALEKELLEEMKHPSRARRAKA
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Known secondary structure (DSSP) GGGT
SS
TTTT






TSS
 .........500.........510.........520.........530.........540.........550.........560
Sequence RKRLEVVRAFLDSGNRPEWMILEAVPVLPPDLRPMVQVDGGRFATSDLNDLYRRLINRNNRLKKLLAQGA
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Known secondary structure (DSSP) T

GGGG

GGGS

TTS

TTT
 .........570.........580.........590.........600.........610.........620.........630
Sequence PEIIIRNEKRMLQEAVDALLDNGRRGAPVTNPGSDRPLRSLTDILSGKQGRFRQNLLGKRVDYSGRSVIV
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Known secondary structure (DSSP)
TTSSSS

B
SS

SB


SSTTSTS



SS
 .........640.........650.........660.........670.........680.........690.........700
Sequence VGPQLKLHQCGLPKRMALELFKPFLLKKMEEKGIAPNVKAARRMLERQRDIKDEVWDALEEVIHGKVVLL
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Known secondary structure (DSSP)
TTS
TTTSTTSSSSGGG

TTT

 .........710.........720.........730.........740.........750.........760.........770
Sequence NRAPTLHRLGIQAFQPVLVEGQSIQLHPLVCEAFNADFDGDQMAVHVPLSSFAQAEARIQMLSAHNLLSP
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Known secondary structure (DSSP)
SS

SGGGSSSS
GGGT

SSS



STBGGG

B
S
 .........780.........790.........800.........810.........820.........830.........840
Sequence ASGEPLAKPSRDIILGLYYITQVRKEKKGAGLEFATPEEALAAHERGEVALNAPIKVAGRETSVGRLKYV
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Known secondary structure (DSSP) SS
SBSS


T




SSS
S
S
TSS
TT
SSS
 .........850.........860.........870.........880.........890.........900.........910
Sequence FANPDEALLAVAHGIVDLQDVVTVRYMGKRLETSPGRILFARIVAEAVEDEKVAWELIQLDVPQEKNSLK
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Known secondary structure (DSSP) SSTTSS
TTS
TT
T
S
TTS


 .........920.........930.........940.........950.........960.........970.........980
Sequence DLVYQAFLRLGMEKTARLLDALKYYGFTFSTTSGITIGIDDAVIPEEKKQYLEEADRKLLQIEQAYEMGF
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Known secondary structure (DSSP) T
T



GGGS


TTTS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence LTDRERYDQILQLWTETTEKVTQAVFKNFEENYPFNPLYVMAQSGARGNPQQIRQLCGLRGLMQKPSGET
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Known secondary structure (DSSP) S

TT
TSS

S

B

B
TTS
B
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence FEVPVRSSFREGLTVLEYFISSHGARKGGADTALRTADSGYLTRKLVDVTHEIVVREADCGTTNYISVPL
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Known secondary structure (DSSP)
SS
B


TTT


TT
S






S
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence FQPDEVTRSLRLRKRADIEAGLYGRVLAREVEVLGVRLEEGRYLSMDDVHLLIKAAEAGEIQEVPVRSPL
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Known secondary structure (DSSP) TTTT

TT
BBSS
TT
TT
B

TTS
S

TT
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence TCQTRYGVCQKCYGYDLSMARPVSIGEAVGIVAAQSIGEPGTQLTMVAGAADITQGLPRVIELFEARRPK
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Known secondary structure (DSSP) T


TT
TTTT

TT

TTGGG





SS



TT


S
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence AKAVISEIDGVVRIEETEEKLSVFVESEGFSKEYKLPKEARLLVKDGDYVEAGQPLTRGAIDPHQLLEAK
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Known secondary structure (DSSP) S
B
SS

SS

SS


SS

BS

TT

TT
BSBSS
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence GPEAVERYLVEEIQKVYRAQGVKLHDKHIEIVVRQMMKYVEVTDPGDSRLLEGQVLEKWDVEALNERLIA
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Known secondary structure (DSSP) TT



T

TTSS

TT
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence EGKTPVAWKPLLMGVTKSALSTKSWLSAASFQNTTHVLTEAAIAGKKDELIGLKENVILGRLIPAGTGSD
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Known secondary structure (DSSP) T






T
S
S
T



ST


SSGGG
T
 .........1480.........
Sequence FVRFTQVVDQKTLKAIEEA
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Known secondary structure (DSSP) TTTT




T


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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