PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4g54A_

Fold library id	PDB Header	Molecule	Title
c4g54A_	PDB header: peptidoglycan-binding protein	Chain: A: PDB Molecule: general secretion pathway protein;	PDBTitle: crystal structure of a periplasmic domain of the epsab fusion protein2 of the vibrio vulnificus type ii secretion system

Links to external resources
Added to library: Mon Feb 4 12:07:31 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence W L G E S A V A R M T T R A Q G L E E L Y K L W G Y R A T R I D T M C E Q P S T S I F Q C Q V R Q L N W Q E L Q Q T P H P L L L T L Q H E G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
G G G G
B
S T T
T T G G G
S S
S S S
T
S S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Q R A Y V V L L E V D P E R V V L L T G E Q R L T F T V S Q L M S L W R G E V T D L W P M P L R E T L R L G M H G E A I E V L D Q L L A K A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S S
S
B
T T
B S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L N D E P L K T T Q F N A E L M Q R V E W F Q R W Q A M T E D G I A G Q R T L A R L Q H M V S L S E P W R A L T Q E E Q V M R Y P E F P S L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
S B
T T S
S
B
S
G G G G G T
S S
T T

. . . . . . . . . 220 . .

Sequence A P L L R T Y P L A E T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	W	L	G	E	S	A	V	A	R	M	T	T	R	A	Q	G	L	E	E	L	Y	K	L	W	G	Y	R	A	T	R	I	D	T	M	C	E	Q	P	S	T	S	I	F	Q	C	Q	V	R	Q	L	N	W	Q	E	L	Q	Q	T	P	H	P	L	L	L	T	L	Q	H	E	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T		G	G	G	G		B		S												T	T					T	T	G	G	G			S	S		S	S	S															T		S	S									T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Q	R	A	Y	V	V	L	L	E	V	D	P	E	R	V	V	L	L	T	G	E	Q	R	L	T	F	T	V	S	Q	L	M	S	L	W	R	G	E	V	T	D	L	W	P	M	P	L	R	E	T	L	R	L	G	M	H	G	E	A	I	E	V	L	D	Q	L	L	A	K	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												S	S							S	S																												S		B		T	T		B	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	N	D	E	P	L	K	T	T	Q	F	N	A	E	L	M	Q	R	V	E	W	F	Q	R	W	Q	A	M	T	E	D	G	I	A	G	Q	R	T	L	A	R	L	Q	H	M	V	S	L	S	E	P	W	R	A	L	T	Q	E	E	Q	V	M	R	Y	P	E	F	P	S	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	S						S	B																T	T	S				S		B														S			G	G	G	G	G	T					S	S		T	T
	.	.	.	.	.	.	.	.	.	220	.	.
Sequence	A	P	L	L	R	T	Y	P	L	A	E	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											B