PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4fzlB_

Fold library id	PDB Header	Molecule	Title
c4fzlB_	PDB header: antimicrobial protein	Chain: B: PDB Molecule: bacteriocin;	PDBTitle: high resolution structure of truncated bacteriocin syringacin m from2 pseudomonas syringae pv. tomato dc3000

Links to external resources
Added to library: Sat Oct 6 12:48:25 2012

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M Q N P V A T V L L L Q G D L Y C S P N C L A T F Q D Q A R R D S F G I Q S K V A L K T F A A A D Q R E A E G R D L R T A Y N E I A T D I G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T T S
T T
T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence R S Q Q I N E N I I K Y P P G N H V L S G G L M T P F H A L A H G M F G L G A P L T F P I Q N V G L N V D I R G I P D V M N V I Q S A R P V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S S
S G G G S
S S
B
S S T T S T T
G G G S
G G G
S S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence G T S S L D V N F A Y D V G K D S N A S W L T L G N I T L R L V G T I D K N A S G A W T F S G E I R A F N D V Y D A N P S N H R G W L G E N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G T
S
T T S
G G G G

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . .

Sequence L T S L L S A V P F T S Y S I E I P G S L P V T V S G N L E H H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
T T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	Q	N	P	V	A	T	V	L	L	L	Q	G	D	L	Y	C	S	P	N	C	L	A	T	F	Q	D	Q	A	R	R	D	S	F	G	I	Q	S	K	V	A	L	K	T	F	A	A	A	D	Q	R	E	A	E	G	R	D	L	R	T	A	Y	N	E	I	A	T	D	I	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	S	S	T	T													T	S																				T	T															T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	R	S	Q	Q	I	N	E	N	I	I	K	Y	P	P	G	N	H	V	L	S	G	G	L	M	T	P	F	H	A	L	A	H	G	M	F	G	L	G	A	P	L	T	F	P	I	Q	N	V	G	L	N	V	D	I	R	G	I	P	D	V	M	N	V	I	Q	S	A	R	P	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	S	S			S	G	G	G	S				S	S			B			S	S	T	T												S	T	T							G	G	G	S						G	G	G											S	S		S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	G	T	S	S	L	D	V	N	F	A	Y	D	V	G	K	D	S	N	A	S	W	L	T	L	G	N	I	T	L	R	L	V	G	T	I	D	K	N	A	S	G	A	W	T	F	S	G	E	I	R	A	F	N	D	V	Y	D	A	N	P	S	N	H	R	G	W	L	G	E	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													G	G	G	T									S														T	T	S																			G	G	G	G
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Sequence	L	T	S	L	L	S	A	V	P	F	T	S	Y	S	I	E	I	P	G	S	L	P	V	T	V	S	G	N	L	E	H	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	S																					T	T	T