PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4fp4A_

Fold library id	PDB Header	Molecule	Title
c4fp4A_	PDB header: transferase	Chain: A: PDB Molecule: polyprenyl synthetase;	PDBTitle: crystal structure of isoprenoid synthase a3mx09 (target efi-501993)2 from pyrobaculum calidifontis

Links to external resources
Added to library: Sat Jul 14 13:25:32 2012

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M Y S L P P E V L A A L E R V K A R L N K V G E E L E P I S L R K A V R H Y I E T P G K L L R P L L L L T F T Y S I D R R S I M D P R I L E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T T
S S S
G G G G G

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A A A I V E L L H V V S L L Q D D V M D Q H D Q R R G I K T P R A M Y G D G R A I V A S D W L I A E S I K M A V N L G A D V V T Y L A D V A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S B S S S S B
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence Q R L S V G Q A L D L E G E R D K A A E F K T A P L I E A A L V M P L V I L G R R E L I E T A K K L G T K L G I L Y Q Y S R P E T K S I A N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T
G G G T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . .

Sequence E I G R Y L L K I K E H V G D A I A P F E R L I K Y L I G K A L E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G G

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	Y	S	L	P	P	E	V	L	A	A	L	E	R	V	K	A	R	L	N	K	V	G	E	E	L	E	P	I	S	L	R	K	A	V	R	H	Y	I	E	T	P	G	K	L	L	R	P	L	L	L	L	T	F	T	Y	S	I	D	R	R	S	I	M	D	P	R	I	L	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																					T	T	T	T	T		S	S													S																			G	G	G	G	G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	A	A	I	V	E	L	L	H	V	V	S	L	L	Q	D	D	V	M	D	Q	H	D	Q	R	R	G	I	K	T	P	R	A	M	Y	G	D	G	R	A	I	V	A	S	D	W	L	I	A	E	S	I	K	M	A	V	N	L	G	A	D	V	V	T	Y	L	A	D	V	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																				T	T		S	B	S	S	S	S	B																												T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Q	R	L	S	V	G	Q	A	L	D	L	E	G	E	R	D	K	A	A	E	F	K	T	A	P	L	I	E	A	A	L	V	M	P	L	V	I	L	G	R	R	E	L	I	E	T	A	K	K	L	G	T	K	L	G	I	L	Y	Q	Y	S	R	P	E	T	K	S	I	A	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T	T										T																T		G	G	G															T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Sequence	E	I	G	R	Y	L	L	K	I	K	E	H	V	G	D	A	I	A	P	F	E	R	L	I	K	Y	L	I	G	K	A	L	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														G	G	G	G