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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c4fmiN_

Fold library idPDB HeaderMoleculeTitle
c4fmiN_PDB header: viral proteinChain: N: PDB Molecule: vp1;PDBTitle: merkel cell polyomavirus vp1 in complex with 3'-sialyllactosamine


Added to library: Sat Sep 8 14:49:11 2012
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence VEVLSVVTGEDSITQIELYLNPRMGVNSPDLPTTSNWYTYTYDLQPKGSSPDQPIKENLPAYSVARVSLP
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Known secondary structure (DSSP)


STT


BSS


S

TTGGGGTTB
S




SSS




GGG

B


 .........80.........90.........100.........110.........120.........130.........140
Sequence MLNEDITCDTLQMWEAISVKTEVVGISSLINVHYWDMKRVHDYGAGIPVSGVNYHMFAIGGEPLDLQGLV
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Known secondary structure (DSSP)


S

SSSS
GGGGG



TTB
BSSTT

B

SBS
SS


 .........150.........160.........170.........180.........190.........200.........210
Sequence LDYQTQYPKTGPITIETVLGRKMTPKNQGLDPQAKAKLDKDGNYPIEVWCPDPSKNENSRYYGSIQTGSQ
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Known secondary structure (DSSP) S
TT









TS


GGGGS

TT

STT
SBTTT
TTS
TT
SSS
 .........220.........230.........240.........250.........260.........270........
Sequence TPTVLQFSNTLTTVLLDENGVGPLCKGDGLFISCADIVGFLFKTSGKMALHGLPRYFNVTLRKRWVKN
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Known secondary structure (DSSP)







TT




TTS


GGGBTTS




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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