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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c4ffnA_

Fold library idPDB HeaderMoleculeTitle
c4ffnA_PDB header: ligase/substrateChain: A: PDB Molecule: pylc;PDBTitle: pylc in complex with d-ornithine and amppnp


Added to library: Sat Sep 22 14:31:50 2012
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MKTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQALIRNYADEFYCFDVIKEPEKLLELSKRVDAVLPV
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Known secondary structure (DSSP)



STT
S
TT
TTTTTSS

TTT
TSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence NENLACIEFLNSIKEKFSCPVLFDFEAYRISRDKKKSKDYFKSIGVPTPQDRPSKPPYFVKPPCESSSVG
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Known secondary structure (DSSP)


GGG
SS
B


T
TT




BS
SSS

SS

TTTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence ARIIYGLEPDTLVEEYVEGEVVSLEVVGDGSHFAVVKETLVHIDETYDCHMVTPLPANPLFRQISHDLAA
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Known secondary structure (DSSP)




SS



SSS




TTS




 .........220.........230.........240.........250.........260.........270.........280
Sequence NLPLKGIMDVEAIFGPKGLRVIEIDARFPSQTPTVVYYSSGINLIELLFRAFTDGVEEIENKYCIYEHLM
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Known secondary structure (DSSP) TTT
TT
S

SS


TTT







 .........290.........300.........310.........320.........330.........340.........350
Sequence FGENGVLIPVGEQVLSMGSDYGKFYEEPGIEIFLCKGEYPVFTMVFWGKDREETGAKRCKGLSVLKERFG
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Known secondary structure (DSSP)
GGGB

TT
STTSSS
SS
 ...
Sequence AVL
Predicted secondary structure


SS confidence


Known secondary structure (DSSP)
B


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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