PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4fdyA_

Fold library id	PDB Header	Molecule	Title
c4fdyA_	PDB header: hydrolase	Chain: A: PDB Molecule: similar to lipoprotein, nlp/p60 family;	PDBTitle: crystal structure of a similar to lipoprotein, nlp/p60 family2 (sav0400) from staphylococcus aureus subsp. aureus mu50 at 2.23 a3 resolution

Links to external resources
Added to library: Sat Aug 4 13:55:25 2012

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G V T V S P E V L A H R P L I E K Y G K E Y G I E D Y V S Y I L A I X Q V E S G G T A E D V X Q S S E S L G L P P N S L S T E E S I K Q G V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) u n d e f i n e d

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence K Y F S E L L T S A E Q Q G V D I D S V I Q S Y N Y G G G F L N Y V R S H G K K Y T Y E L A E Q F S K E K S G G Q K A D Y P N P I A I P V N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence G G W R Y N Y G N Q F Y V Q L V S Q Y L T D T S P T E F D D E T V Q V I X D E A L K Y E G F P Y V F G G A S P T T S F D S G L I Q W V Y D K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence A G I S L P R V A Q D Q Y D A T Q E I S X E E A Q A G D L I F F H S T Y N A G T Y V T H V A I Y L E G N R F Y H A G D P I G Y G D L S S R Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

. . . . . . . . . 290 . . . .

Sequence W Q D H L I G A R R V I H N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	V	T	V	S	P	E	V	L	A	H	R	P	L	I	E	K	Y	G	K	E	Y	G	I	E	D	Y	V	S	Y	I	L	A	I	X	Q	V	E	S	G	G	T	A	E	D	V	X	Q	S	S	E	S	L	G	L	P	P	N	S	L	S	T	E	E	S	I	K	Q	G	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	u	n	d	e	f	i	n	e	d
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	K	Y	F	S	E	L	L	T	S	A	E	Q	Q	G	V	D	I	D	S	V	I	Q	S	Y	N	Y	G	G	G	F	L	N	Y	V	R	S	H	G	K	K	Y	T	Y	E	L	A	E	Q	F	S	K	E	K	S	G	G	Q	K	A	D	Y	P	N	P	I	A	I	P	V	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	G	G	W	R	Y	N	Y	G	N	Q	F	Y	V	Q	L	V	S	Q	Y	L	T	D	T	S	P	T	E	F	D	D	E	T	V	Q	V	I	X	D	E	A	L	K	Y	E	G	F	P	Y	V	F	G	G	A	S	P	T	T	S	F	D	S	G	L	I	Q	W	V	Y	D	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	A	G	I	S	L	P	R	V	A	Q	D	Q	Y	D	A	T	Q	E	I	S	X	E	E	A	Q	A	G	D	L	I	F	F	H	S	T	Y	N	A	G	T	Y	V	T	H	V	A	I	Y	L	E	G	N	R	F	Y	H	A	G	D	P	I	G	Y	G	D	L	S	S	R	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)
	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Sequence	W	Q	D	H	L	I	G	A	R	R	V	I	H	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)