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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4f7bA_

Fold library idPDB HeaderMoleculeTitle
c4f7bA_PDB header: cell adhesionChain: A: PDB Molecule: lysosome membrane protein 2;PDBTitle: structure of the lysosomal domain of limp-2


Added to library: Sat Oct 12 08:32:00 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence IEKKIVLRNGTEAFDSWEKPPLPVYTQFYFFNVTNPEEILRGETPRVEEVGPYTYRELRNKANIQFGDNG
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Known secondary structure (DSSP)
GGG
S

TT
S

S
S
TT


BGGG
 .........80.........90.........100.........110.........120.........130.........140
Sequence TTISAVSNKAYVFERDQSVGDPKIDLIRTLNIPVLTVIEWSQVHFLREIIEAMLKAYQQKLFVTHTVDEL
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Known secondary structure (DSSP) T
GGGSSS
TTT



STT

S
 .........150.........160.........170.........180.........190.........200.........210
Sequence LWGYKDEILSLIHVFRPDISPYFGLFYEKNGTNDGDYVFLTGEDSYLNFTKIVEWNGKTSLDWWITDKCN
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Known secondary structure (DSSP)


TTS
S
TTTT
SS

S


TTS
GGGTTTTBSB
SSSSSTTTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence MINGTDGDSFHPLITKDEVLYVFPSDFCRSVYITFSDYESVQGLPAFRYKVPAEILANTSDNAGFCIPEG
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Known secondary structure (DSSP) B

SB
SS


SS

TT



GGGTS
TT

GGGGSS
GGGGGG
TTTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence NCLGSGVLNVSICKNGAPIIMSFPHFYQADERFVSAIEGMHPNQEDHETFVDINPLTGIILKAAKRFQIN
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Known secondary structure (DSSP)



TT
TTTTTT


GGGTTS
TSBT






TTT

 .........360.........370.........380.........390...
Sequence IYVKKLDDFVETGDIRTMVFPVMYLNESVHIDKETASRLKSMI
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Known secondary structure (DSSP)


TT
GGGTT

S

TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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