PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4f77t_

Fold library id	PDB Header	Molecule	Title
c4f77t_	PDB header: splicing	Chain: T: PDB Molecule: small nuclear ribonucleoprotein f;	PDBTitle: the 8s snrnp assembly intermediate

Links to external resources
Added to library: Sat Mar 2 08:26:17 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence P E S G E E Y L M H M F Y E R K R C P A V V T K R S S K I R N N T G N T T L E M L D N P E L P P F K C L L P T P E W R D E Q V K S F Q A A R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T S
S
S S S
S
T T S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence S Q V L V L R K E L A N N N Y D Q S G E P P L T S D Q E K W K E F C R N Q Q P L L S T L L H L T Q N D L E L L L E M L S K W L Q D P N T T V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
G G G S
S S
T T S
T T S
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence D L L H D V W L A R W L Y A T L V C L H L P L E P H V F S T L R Y I A R T C I H L R N Q L K E D E V Q R A A P Y N L L L T L T V Q V F A Q N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
S S
T
S S
T T T
T

. . . . . .

Sequence D F K D Y I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S G G G

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	P	E	S	G	E	E	Y	L	M	H	M	F	Y	E	R	K	R	C	P	A	V	V	T	K	R	S	S	K	I	R	N	N	T	G	N	T	T	L	E	M	L	D	N	P	E	L	P	P	F	K	C	L	L	P	T	P	E	W	R	D	E	Q	V	K	S	F	Q	A	A	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S	T													S		S							S	S	S																			S		T	T	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	S	Q	V	L	V	L	R	K	E	L	A	N	N	N	Y	D	Q	S	G	E	P	P	L	T	S	D	Q	E	K	W	K	E	F	C	R	N	Q	Q	P	L	L	S	T	L	L	H	L	T	Q	N	D	L	E	L	L	L	E	M	L	S	K	W	L	Q	D	P	N	T	T	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T	T			G	G	G	S							S										S								T	T	S															T	T	S			S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	D	L	L	H	D	V	W	L	A	R	W	L	Y	A	T	L	V	C	L	H	L	P	L	E	P	H	V	F	S	T	L	R	Y	I	A	R	T	C	I	H	L	R	N	Q	L	K	E	D	E	V	Q	R	A	A	P	Y	N	L	L	L	T	L	T	V	Q	V	F	A	Q	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S	S																	S	S																						T		S	S																		T	T	T			T
	.	.	.	.	.	.
Sequence	D	F	K	D	Y	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	S	G	G	G