Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4f5cA_

Fold library idPDB HeaderMoleculeTitle
c4f5cA_PDB header: hydrolase/viral proteinChain: A: PDB Molecule: aminopeptidase n;PDBTitle: crystal structure of the spike receptor binding domain of a porcine2 respiratory coronavirus in complex with the pig aminopeptidase n3 ectodomain


Added to library: Sat Aug 25 14:29:19 2012
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LDQSKPWNRYRLPTTLLPDSYNVTLRPYLTPNADGLYIFKGKSIVRFICQEPTDVIIIHSKKLNYTTHMV
Predicted secondary structure

































SS confidence





































































Known secondary structure (DSSP)


SSTTSSSS

SS
S

TTS

SS

S

S





 .........80.........90.........100.........110.........120.........130.........140
Sequence VLRGVGDSQVPEIDRTELVELTEYLVVHLKGSLQPGHMYEMESEFQGELADDLAGFYRSEYMEGNVKKVL
Predicted secondary structure






































SS confidence





































































Known secondary structure (DSSP)
TT







TTTTS


TT


SSSSTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence ATTQMQSTDARKSFPCFDEPAMKATFNITLIHPNNLTALSNMPPKGSSTPLAEDPNWSVTEFETTPVMST
Predicted secondary structure





































SS confidence





































































Known secondary structure (DSSP)
SSS
STTTS
B

SSSS
BTTSSS
BSSS

SSSTTB



SB
S
 .........220.........230.........240.........250.........260.........270.........280
Sequence YLLAYIVSEFQSVNETAQNGVLIRIWARPNAIAEGHGMYALNVTGPILNFFANHYNTSYPLPKSDQIALP
Predicted secondary structure























SS confidence





































































Known secondary structure (DSSP) SS

S

TTS

TGGGTTTTS

SSSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence DFNAGAMENWGLVTYRENALLFDPQSSSISNKERVVTVIAHELAHQWFGNLVTLAWWNDLWLNEGFASYV
Predicted secondary structure




































SS confidence





































































Known secondary structure (DSSP) S
SSS

TT


TTT

TTTBTTTSSGGG
 .........360.........370.........380.........390.........400.........410.........420
Sequence EYLGADHAEPTWNLKDLIVPGDVYRVMAVDALASSHPLTTPAEEVNTPAQISEMFDSISYSKGASVIRML
Predicted secondary structure


















SS confidence





































































Known secondary structure (DSSP) STTS
GGGGTTTTTSTT


S


GGG

STT

S
 .........430.........440.........450.........460.........470.........480.........490
Sequence SNFLTEDLFKEGLASYLHAFAYQNTTYLDLWEHLQKAVDAQTSIRLPDTVRAIMDRWTLQMGFPVITVDT
Predicted secondary structure






















SS confidence





































































Known secondary structure (DSSP) TTTT
TTT
SSS

SS
SS
S
T
 .........500.........510.........520.........530.........540.........550.........560
Sequence KTGNISQKHFLLDSESNVTRSSAFDYLWIVPISSIKNGVMQDHYWLRDVSQAQNDLFKTASDDWVLLNVN
Predicted secondary structure






































SS confidence





































































Known secondary structure (DSSP) TTT

SSSS






TTSS



TT



SSS
GGG


SS

SGG
 .........570.........580.........590.........600.........610.........620.........630
Sequence VTGYFQVNYDEDNWRMIQHQLQTNLSVIPVINRAQVIYDSFNLATAHMVPVTLALDNTLFLNGEKEYMPW
Predicted secondary structure


















SS confidence





































































Known secondary structure (DSSP) G
SSS
TTS
GGGS
TSS
TTGGGGG


 .........640.........650.........660.........670.........680.........690.........700
Sequence QAALSSLSYFSLMFDRSEVYGPMKKYLRKQVEPLFQHFETLTKNWTERPENLMDQYSEINAISTACSNGL
Predicted secondary structure



















SS confidence





































































Known secondary structure (DSSP) TTSTTSTTTTTTTS

SSTT
 .........710.........720.........730.........740.........750.........760.........770
Sequence PQCENLAKTLFDQWMSDPENNPIHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQAQLVNEADKLRSALACS
Predicted secondary structure
















SS confidence





































































Known secondary structure (DSSP) TSTTS

S
TTTS


SGGG
 .........780.........790.........800.........810.........820.........830.........840
Sequence NEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGSFSFSNLIQGVTR
Predicted secondary structure













SS confidence





































































Known secondary structure (DSSP)

TT
TTTS
TSTTSTT



GG
 .........850.........860.........870.........880.........890.........900.
Sequence RFSSEFELQQLEQFKKNNMDVGFGSGTRALEQALEKTKANIKWVKENKEVVLNWFIEHSLV
Predicted secondary structure














SS confidence




























































Known secondary structure (DSSP) G

ST
SS


TTTTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D