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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4ewcA_

Fold library idPDB HeaderMoleculeTitle
c4ewcA_PDB header: rna binding proteinChain: A: PDB Molecule: putative nucleoprotein;PDBTitle: crystal structure of the infectious salmon anemia virus nucleoprotein


Added to library: Sat May 11 08:24:12 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GXTYSFDVRDNTLVVRRSTATSGIKISYREDRGLLQKAVYVDKKIRKFLEEEKAVAAAIERSVEFDNFSK
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Known secondary structure (DSSP)


SSSB








TTT

B




TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence EAAANIEXAGVSNXAYNLSLFIGXVFPALTTFFSAILSEGEXSIWQNGQAIXRILALADETKLNVVTANG
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Known secondary structure (DSSP) TGGG


TTTS
TB


SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence KVKQVEVNLNDLKAAFRQSRPKRSDYRKGQGSKATESSISNQCXALIXKSVLSADQLFAPGVKXXRTNGF
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Known secondary structure (DSSP) B
S

TTTS


TT



TT

STT
 .........220.........230.........240.........250.........260.........270.........280
Sequence NASYTTLAEGANIPSKYLRHXRNCGGVALDLXGXKRIKNSKSKIFSIIQKKVRGRCRTEEQRLLTSALKI
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Known secondary structure (DSSP)
GGGGGGGTTTTS
TT
GGGS
T




S

T
 .........290.........300.........310.........320.........330.........340.........350
Sequence SDGENKFQRIXDTLCTSFLIDPPRTTKCFIPPISSLXXYIQEGNSVLAXDFXKNGEDACKICREAKLKVG
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Known secondary structure (DSSP) TS
STTTS










TT


TT

SSS
SS

 .........360.........370.........380.........390.........400.........410.........420
Sequence VNSTFTXSVARTCVAVSXVATAFCSADIIENAVPGSERYRSNIKANTTKPKKDSTYTIQGLRLSNVRYEA
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Known secondary structure (DSSP)
SSS
TT
TTSBSTT

S
GGG


S
SS

SS
B



TT


 .........430.........440.........450.........460.........470.........480.........490
Sequence RPEDRSWQVNVTDSFGGLAVFNQGAIREXLVRALVKRILKSASERSARAVKTFXVGEQGKSAIVISGVGL
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Known secondary structure (DSSP)









TTSS



TS
TT
S
BT
 .....
Sequence FSIDF
Predicted secondary structure

SS confidence




Known secondary structure (DSSP) T
S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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