PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4evwB_

Fold library id	PDB Header	Molecule	Title
c4evwB_	PDB header: transferase	Chain: B: PDB Molecule: nucleoside-diphosphate-sugar pyrophosphorylase;	PDBTitle: crystal structure of the nucleoside-diphosphate-sugar2 pyrophosphorylase from vibrio cholerae rc9. northeast structural3 genomics consortium (nesg) target vcr193.

Links to external resources
Added to library: Sat May 26 12:13:59 2012

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence X I V I P X A G X S S R F F K A G Y T Q P K Y X L E A H G Q T L F E H S V N S F A A Y F A S T P F L F I V R N V Y D T A V F V R E K A T Q L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T
S
G G G
T T G G G G G G T T T S
S S T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G I K Q F Y I A E L H T E T R G Q A E T V T L G L E E L A K Q G V D Y Q G S I T V F N I D T F R P N F V F P D I S Q H S D G Y L E V F Q G G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S S S
S S T T
S
T T
T T
G G G G S S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence G D N W S F A K P E H A G S T K V I Q T A E K N P I S D L C S T G L Y H F N R K E D Y L E A Y R E Y V A R P S Q E W E R G E L Y I A P L Y N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
S
S S T T
B S S S
S S S S
T S
G G G
S
S
S T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . .

Sequence E L I Q K G L N I H Y H L I A R H E V I F C G V P D E Y T D F L R Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
G G G
S

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	X	I	V	I	P	X	A	G	X	S	S	R	F	F	K	A	G	Y	T	Q	P	K	Y	X	L	E	A	H	G	Q	T	L	F	E	H	S	V	N	S	F	A	A	Y	F	A	S	T	P	F	L	F	I	V	R	N	V	Y	D	T	A	V	F	V	R	E	K	A	T	Q	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S									T			S		G	G	G				T	T									G	G	G	G	G	G	T	T	T	S								S	S	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	I	K	Q	F	Y	I	A	E	L	H	T	E	T	R	G	Q	A	E	T	V	T	L	G	L	E	E	L	A	K	Q	G	V	D	Y	Q	G	S	I	T	V	F	N	I	D	T	F	R	P	N	F	V	F	P	D	I	S	Q	H	S	D	G	Y	L	E	V	F	Q	G	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T		S	S							S	S			S	S															T	T					S							T	T				T	T					G	G	G	G	S	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	G	D	N	W	S	F	A	K	P	E	H	A	G	S	T	K	V	I	Q	T	A	E	K	N	P	I	S	D	L	C	S	T	G	L	Y	H	F	N	R	K	E	D	Y	L	E	A	Y	R	E	Y	V	A	R	P	S	Q	E	W	E	R	G	E	L	Y	I	A	P	L	Y	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S		S						S	S	T	T			B						S	S	S		S	S	S										S														T	S		G	G	G		S		S				S	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Sequence	E	L	I	Q	K	G	L	N	I	H	Y	H	L	I	A	R	H	E	V	I	F	C	G	V	P	D	E	Y	T	D	F	L	R	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T										G	G	G						S