PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4ernA_

Fold library id	PDB Header	Molecule	Title
c4ernA_	PDB header: hydrolase	Chain: A: PDB Molecule: tfiih basal transcription factor complex helicase xpb	PDBTitle: crystal structure of the c-terminal domain of human xpb/ercc-32 excision repair protein at 1.80 a

Links to external resources
Added to library: Mon Feb 4 15:53:40 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence I A K V Q C A E V W C P M S P E F Y R E Y V A I K T K K R I L L Y T M N P N K F R A C Q F L I K F H E R R N D K I I V F A D N V F A L K E Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S G G G
T T T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A I R L N K P Y I Y G P T S Q G E R M Q I L Q N F K H N P K I N T I F I S K V G D T S F D L P E A N V L I Q I S S H G G S R R Q E A Q R L G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T S
T T
G G G T T T S
B S S
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence R V L R A K K G M V A E E Y N A F F Y S L V S Q D T Q E M A Y S T K R Q R F L V D Q G Y S F K V I T K L A G M E E E D L A F S T K E E Q Q Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) B
T T
S S S S
S T T S G G G T T
S S
T T G G G S
S
S

. . . . . . . . . 220 . . . . . . . . .

Sequence L L Q K V L A A T D L D A E E E V V A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
G G G G S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	I	A	K	V	Q	C	A	E	V	W	C	P	M	S	P	E	F	Y	R	E	Y	V	A	I	K	T	K	K	R	I	L	L	Y	T	M	N	P	N	K	F	R	A	C	Q	F	L	I	K	F	H	E	R	R	N	D	K	I	I	V	F	A	D	N	V	F	A	L	K	E	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																										S	G	G	G																							T	T	T								S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	I	R	L	N	K	P	Y	I	Y	G	P	T	S	Q	G	E	R	M	Q	I	L	Q	N	F	K	H	N	P	K	I	N	T	I	F	I	S	K	V	G	D	T	S	F	D	L	P	E	A	N	V	L	I	Q	I	S	S	H	G	G	S	R	R	Q	E	A	Q	R	L	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T						T	T	S																T	T								G	G	G	T	T	T	S					B	S					S				S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	R	V	L	R	A	K	K	G	M	V	A	E	E	Y	N	A	F	F	Y	S	L	V	S	Q	D	T	Q	E	M	A	Y	S	T	K	R	Q	R	F	L	V	D	Q	G	Y	S	F	K	V	I	T	K	L	A	G	M	E	E	E	D	L	A	F	S	T	K	E	E	Q	Q	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			B				T	T		S	S	S	S		S									T	T	S	G	G	G													T	T							S	S		T	T	G	G	G	S			S			S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Sequence	L	L	Q	K	V	L	A	A	T	D	L	D	A	E	E	E	V	V	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S		G	G	G	G	S