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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c4egqD_

Fold library idPDB HeaderMoleculeTitle
c4egqD_PDB header: ligaseChain: D: PDB Molecule: d-alanine--d-alanine ligase;PDBTitle: crystal structure of d-alanine-d-alanine ligase b from burkholderia2 pseudomallei


Added to library: Sat Apr 14 13:08:36 2012
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence IDPKRFGKVAVLLGGDSAEREVSLNSGRLVLQGLRDAGIDAHPFDPAQRPLAALKDEGFVRAFNALHGGY
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Known secondary structure (DSSP)

GGGG



SSTTTT

TTTS
TTTT




SGG
 .........80.........90.........100.........110.........120.........130.........140
Sequence GENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGIPTPPFETVMRDYAARAQDIVAKLGVPL
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Known secondary structure (DSSP) GTSSTT
SS


TT







SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence FVKPALPAALEEAAKHDKIVIVEKSIEGGGEYTACIAADLDLPLIRIVPAGEFYDYHAKYIANQYLIPCG
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Known secondary structure (DSSP)


S





TT










TT




SS
S
 .........220.........230.........240.........250.........260.........270.........280
Sequence LDAAKEAEFKRIARRAFDVLGCTDWGRADFMLDAAGNPYFLEVNTAPGMTDHSLPPKAARAVGIGYSELV
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Known secondary structure (DSSP)

TT

S
TT

SS


STTSTT

 ........
Sequence VKVLSLTL
Predicted secondary structure

SS confidence







Known secondary structure (DSSP) TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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