PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4egjD_

Fold library id	PDB Header	Molecule	Title
c4egjD_	PDB header: ligase	Chain: D: PDB Molecule: d-alanine--d-alanine ligase;	PDBTitle: crystal structure of d-alanine-d-alanine ligase from burkholderia2 xenovorans

Links to external resources
Added to library: Thu Jan 10 04:40:22 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S I D P K Q F G K V A V L L G G N S A E R E V S L N S G R L V L Q G L R D A G I D A H P F D P A E R P L A A L K E E G F V R A F N A L H G G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G G
S S T T T T
T T T S
T T T
S G

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Y G E N G Q I Q G A L D F Y G I R Y T G S G V L G S A L G L D K F R T K L V W Q Q L G I P T P P F E A G L P L F V K V V V E K S I E G G G E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G T S S T
S S
T
T T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence Y T A C I A G N L D L P V I R I V P A T Q Y L I P C G L T A D E E A R L K V L A R R A F D V L G C T D W G R A D F M L D A D G N P Y F L E V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S
S S
T T T
S T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . .

Sequence N T A P G M T D H S L P P K A A R A V G I S Y Q E L V V A V L A L T L K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
S T T S T T
G G G

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	I	D	P	K	Q	F	G	K	V	A	V	L	L	G	G	N	S	A	E	R	E	V	S	L	N	S	G	R	L	V	L	Q	G	L	R	D	A	G	I	D	A	H	P	F	D	P	A	E	R	P	L	A	A	L	K	E	E	G	F	V	R	A	F	N	A	L	H	G	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				G	G	G	G										S	S	T	T																		T	T								T	T	T	S		T						T	T										S	G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Y	G	E	N	G	Q	I	Q	G	A	L	D	F	Y	G	I	R	Y	T	G	S	G	V	L	G	S	A	L	G	L	D	K	F	R	T	K	L	V	W	Q	Q	L	G	I	P	T	P	P	F	E	A	G	L	P	L	F	V	K	V	V	V	E	K	S	I	E	G	G	G	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	T	S	S										T				S	S										T												T	T											S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Y	T	A	C	I	A	G	N	L	D	L	P	V	I	R	I	V	P	A	T	Q	Y	L	I	P	C	G	L	T	A	D	E	E	A	R	L	K	V	L	A	R	R	A	F	D	V	L	G	C	T	D	W	G	R	A	D	F	M	L	D	A	D	G	N	P	Y	F	L	E	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T																S	S		S	S																		T	T	T			S										T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Sequence	N	T	A	P	G	M	T	D	H	S	L	P	P	K	A	A	R	A	V	G	I	S	Y	Q	E	L	V	V	A	V	L	A	L	T	L	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S				S	T	T	S									T	T													G	G	G