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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4edpA_

Fold library idPDB HeaderMoleculeTitle
c4edpA_PDB header: transport proteinChain: A: PDB Molecule: abc transporter, substrate-binding protein;PDBTitle: 1.85 angstrom resolution crystal structure of an abc transporter from2 clostridium perfringens atcc 13124


Added to library: Sat Apr 14 13:33:01 2012
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence KLVVSTWGLNEDVLKETVFEPFAKEHGVEIVLDIGNNSERLTKMKNNPNSQIDITYLAESFAEQGVEAGI
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Known secondary structure (DSSP)


TTTT




TT



T
 .........80.........90.........100.........110.........120.........130.........140
Sequence FDKLDYSKIPNASEMNEKAKSTVEAGYGPAYTLNSIGIVVDPSAGIEINSWEDLWKPELKNKIAIPDITT
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Known secondary structure (DSSP) B



GGG
GGGGGB
TTTTSS

GGG




SGGGGG
GGGTT

TTS
 .........150.........160.........170.........180.........190.........200.........210
Sequence TNGPAMVEIAAEKAGVDVKTDNGEAAFKELEALKPNVVKTYSKSSDLANMFSNGEIVAAVASDFAFGTIS
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Known secondary structure (DSSP) TTT

TTGGG

TTS
S
 .........220.........230.........240.........250.........260.........270.........280
Sequence KAKPEVINVIPESGTYLNFNTININKNSKNKDLAYEFINYALSKEVQEKTAKALNESPVNKEVKLSEEET
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Known secondary structure (DSSP)
TT


TT

BBTT
S
TS

B

BTT



TTTT
 .........290.........300.........310......
Sequence KNLTYGPVVDNAKVIDFKFVNSVMDQWVNNWNRIMN
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Known secondary structure (DSSP) TTS

ST
B




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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