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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4e54B_

Fold library idPDB HeaderMoleculeTitle
c4e54B_PDB header: dna binding protein/dnaChain: B: PDB Molecule: dna damage-binding protein 2;PDBTitle: damaged dna induced uv-damaged dna-binding protein (uv-ddb)2 dimerization and its roles in chromatinized dna repair


Added to library: Wed Jan 9 18:48:15 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence RNKRSRSPLELEPEAKKLCAKGSGPSRRCDSDCLWVGLAGPQILPPCRSIVRTLHQHKLGRASWPSVQQG
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Known secondary structure (DSSP)
TTS
SSS
SS

SGGGGSTTTT
SSS


SSTTTT


TTSTTT
S
 .........80.........90.........100.........110.........120.........130.........140
Sequence LQQSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSI
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Known secondary structure (DSSP) TTTSTTTTTTTS


SS

SS
TT
TTS

SS

S




SSS


 .........150.........160.........170.........180.........190.........200.........210
Sequence TGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLN
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Known secondary structure (DSSP)

SS
TT
SSS
TTS


SS
S




TTTT
SSSB
 .........220.........230.........240.........250.........260.........270.........280
Sequence MDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPD
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Known secondary structure (DSSP) SSS
B


SB

SS

TT
SSTTSB

TTT

SSS

SB

B
SS


B
TT
 .........290.........300.........310.........320.........330.........340.........350
Sequence GARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYEL
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Known secondary structure (DSSP) SSSSS
SSSSSS







SSS


B

SSSS




TTS

SSTT

 .........360.........370.........380.........390.........400..
Sequence RTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAMGYHILIWSQQ
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Known secondary structure (DSSP)


SSS



SS






TTSS

SS




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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