PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4e38A_

Fold library id	PDB Header	Molecule	Title
c4e38A_	PDB header: lyase	Chain: A: PDB Molecule: keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate	PDBTitle: crystal structure of probable keto-hydroxyglutarate-aldolase from2 vibrionales bacterium swat-3 (target efi-502156)

Links to external resources
Added to library: Sat Mar 24 12:07:00 2012

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence F Q S M M S T I N N Q L K A L K V I P V I A I D N A E D I I P L G K V L A E N G L P A A E I T F R S D A A V E A I R L L R Q A Q P E M L I G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S G G G T T
T T S T T
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A G T I L N G E Q A L A A K E A G A T F V V S P G F N P N T V R A C Q E I G I D I V P G V N N P S T V E A A L E M G L T T L K F F P A E A S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T
S
S S
T
S T T
S T T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence G G I S M V K S L V G P Y G D I R L M P T G G I T P S N I D N Y L A I P Q V L A C G G T W M V D K K L V T N G E W D E I A R L T R E I V E Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
T T
B S S
T T T T S T T B
G G G
T T

. . .

Sequence V N P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	F	Q	S	M	M	S	T	I	N	N	Q	L	K	A	L	K	V	I	P	V	I	A	I	D	N	A	E	D	I	I	P	L	G	K	V	L	A	E	N	G	L	P	A	A	E	I	T	F	R	S	D	A	A	V	E	A	I	R	L	L	R	Q	A	Q	P	E	M	L	I	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																								S	S	G	G	G											T	T								T	T	S	T	T													T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	G	T	I	L	N	G	E	Q	A	L	A	A	K	E	A	G	A	T	F	V	V	S	P	G	F	N	P	N	T	V	R	A	C	Q	E	I	G	I	D	I	V	P	G	V	N	N	P	S	T	V	E	A	A	L	E	M	G	L	T	T	L	K	F	F	P	A	E	A	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S											T		S					S	S													T									S										T	T								S	T	T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	G	G	I	S	M	V	K	S	L	V	G	P	Y	G	D	I	R	L	M	P	T	G	G	I	T	P	S	N	I	D	N	Y	L	A	I	P	Q	V	L	A	C	G	G	T	W	M	V	D	K	K	L	V	T	N	G	E	W	D	E	I	A	R	L	T	R	E	I	V	E	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T										T	T		T	T						B	S	S			T	T	T						T	S	T	T	B							G	G	G							T	T
	.	.	.
Sequence	V	N	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)