PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4dwjB_

Fold library id	PDB Header	Molecule	Title
c4dwjB_	PDB header: transferase	Chain: B: PDB Molecule: thymidylate kinase;	PDBTitle: crystal structure of thymidylate kinase from staphylococcus aureus in2 complex with thymidine monophosphate

Links to external resources
Added to library: Sat Mar 10 12:04:36 2012

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S A F I T F E G P E G S G K T T V I N E V Y H R L V K D Y D V I M T R E P G G V P T G E E I R K I V L E G N D M D I R T E A M L F A A S R R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
S
T T T T
T
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence E H L V L K V I P A L K E G K V V L C D R Y I D S S L A Y Q G Y A R G I G V E E V R A L N E F A I N G L Y P D L T I Y L N V S A E V G R E R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
T T T T T
S
T T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . .

Sequence I I K N S R D Q N R L D Q E D L K F H E K V I E G Y Q E I I H N E S Q R F K S V N A D Q P L E N V V E D T Y Q T I I K Y L E K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S S S
S
S S T T S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	A	F	I	T	F	E	G	P	E	G	S	G	K	T	T	V	I	N	E	V	Y	H	R	L	V	K	D	Y	D	V	I	M	T	R	E	P	G	G	V	P	T	G	E	E	I	R	K	I	V	L	E	G	N	D	M	D	I	R	T	E	A	M	L	F	A	A	S	R	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T	S																	S							T	T	T	T													T		S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	E	H	L	V	L	K	V	I	P	A	L	K	E	G	K	V	V	L	C	D	R	Y	I	D	S	S	L	A	Y	Q	G	Y	A	R	G	I	G	V	E	E	V	R	A	L	N	E	F	A	I	N	G	L	Y	P	D	L	T	I	Y	L	N	V	S	A	E	V	G	R	E	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T							T	T																T	T	T	T	T		S														T	T				S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Sequence	I	I	K	N	S	R	D	Q	N	R	L	D	Q	E	D	L	K	F	H	E	K	V	I	E	G	Y	Q	E	I	I	H	N	E	S	Q	R	F	K	S	V	N	A	D	Q	P	L	E	N	V	V	E	D	T	Y	Q	T	I	I	K	Y	L	E	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	S	S	S																									S			S	S						T	T	S