PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4dmbA_

Fold library id	PDB Header	Molecule	Title
c4dmbA_	PDB header: immune system	Chain: A: PDB Molecule: hd domain-containing protein 2;	PDBTitle: x-ray structure of human hepatitus c virus ns5a-transactivated protein2 2 at the resolution 1.9a, northeast structural genomics consortium3 (nesg) target hr6723

Links to external resources
Added to library: Sat Apr 7 17:49:13 2012

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G A R S L L Q F L R L V G Q L K R V P R T G W V Y R N V Q R P E S V S D H X Y R X A V X A X V I K D D R L N K D R C V R L A L V H D X A E C

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G
B
T T
S S
B S
T T S
T T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence I V G D I A P A D N I P K E E K H R R E E E A X K Q I T Q L L P E D L R K E L Y E L W E E Y E T Q S S A E A K F V K Q L D Q C E X I L Q A S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G
T T S
T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . .

Sequence E Y E D L E H K P G R L Q D F Y D S T A G K F N H P E I V Q L V S E L E A E R S T N I A A A A S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T T T T T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	A	R	S	L	L	Q	F	L	R	L	V	G	Q	L	K	R	V	P	R	T	G	W	V	Y	R	N	V	Q	R	P	E	S	V	S	D	H	X	Y	R	X	A	V	X	A	X	V	I	K	D	D	R	L	N	K	D	R	C	V	R	L	A	L	V	H	D	X	A	E	C
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															G	G	G		B							T	T		S	S			B															S			T	T	S												T	T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	I	V	G	D	I	A	P	A	D	N	I	P	K	E	E	K	H	R	R	E	E	E	A	X	K	Q	I	T	Q	L	L	P	E	D	L	R	K	E	L	Y	E	L	W	E	E	Y	E	T	Q	S	S	A	E	A	K	F	V	K	Q	L	D	Q	C	E	X	I	L	Q	A	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							G	G	G																				T	T	S																		T		S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Sequence	E	Y	E	D	L	E	H	K	P	G	R	L	Q	D	F	Y	D	S	T	A	G	K	F	N	H	P	E	I	V	Q	L	V	S	E	L	E	A	E	R	S	T	N	I	A	A	A	A	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T		T	T	T	T							T	T	T