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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4dkmH_

Fold library idPDB HeaderMoleculeTitle
c4dkmH_PDB header: fluorescent proteinChain: H: PDB Molecule: amphioxus green fluorescent protein, gfpc1a;PDBTitle: crystal structure of amphioxus gfpc1a


Added to library: Sat May 25 08:32:32 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LPTTHEVHVYGSINGVEFDLVGSGKGNPKDGSEEIQVKSTKGPLGFSPYIVVPNIFHQYLPFPDGMSPFQ
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Known secondary structure (DSSP)


TTTTTTSSSS
SS
GGGTSTT

GGG
TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence AAADDGSGYVVHRTIQFEDGASLTGNYRYSYDGGHIKGEFHVVGSGFPADGPVMTKSLTAVDWSVATMLF
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Known secondary structure (DSSP) S

TTS
TT


TTSTTTTT
B




 .........150.........160.........170.........180.........190.........200.........210
Sequence PNDTTVVSTIDWTCPTTSGKRYHATLRTNYTFAKPIAATILQKQPMFVFRKTEVKASDAEINLKEWQKAF
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Known secondary structure (DSSP) TTBTTS
SS


S


SS
 ...
Sequence HDL
Predicted secondary structure

SS confidence


Known secondary structure (DSSP) S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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