PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4df3B_

Fold library id	PDB Header	Molecule	Title
c4df3B_	PDB header: transferase	Chain: B: PDB Molecule: fibrillarin-like rrna/trna 2'-o-methyltransferase;	PDBTitle: crystal structure of aeropyrum pernix fibrillarin in complex with2 natively bound s-adenosyl-l-methionine at 1.7a

Links to external resources
Added to library: Sat Aug 11 13:28:10 2012

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M V E V V S V S R H D R W R G V Y V V E L E D G S L R I A T K N L V P G Q R V Y G E R I F R Y N G E E Y R E W N A Y R S K L A A A L L K G L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S T T T T S
S S T T
S S S
T T
T T T
T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence I E L P V K E G D R I L Y L G I A S G T T A S H M S D I I G P R G R I Y G V E F A P R V M R D L L T V V R D R R N I F P I L G D A R F P E K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T
T
T T S
T T
T T
T T S
T T
G G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence Y R H L V E G V D G L Y A D V A Q P E Q A A I V V R N A R F F L R D G G Y M L M A I K A R S I D V T T E P S E V Y K R E I K T L M D G G L E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G T T T
T T
T T
T T

. . . . . . . . . 220 . . . . . . . . . 230

Sequence I K D V V H L D P F D R D H A M I Y A V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T S T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	V	E	V	V	S	V	S	R	H	D	R	W	R	G	V	Y	V	V	E	L	E	D	G	S	L	R	I	A	T	K	N	L	V	P	G	Q	R	V	Y	G	E	R	I	F	R	Y	N	G	E	E	Y	R	E	W	N	A	Y	R	S	K	L	A	A	A	L	L	K	G	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S	S	S	T	T							T	T	S									S	S	T	T			S	S	S							T	T								T	T	T										T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	I	E	L	P	V	K	E	G	D	R	I	L	Y	L	G	I	A	S	G	T	T	A	S	H	M	S	D	I	I	G	P	R	G	R	I	Y	G	V	E	F	A	P	R	V	M	R	D	L	L	T	V	V	R	D	R	R	N	I	F	P	I	L	G	D	A	R	F	P	E	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S						T	T							T		T	T	S												T	T																					T	T		T	T						S		T	T		G	G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Y	R	H	L	V	E	G	V	D	G	L	Y	A	D	V	A	Q	P	E	Q	A	A	I	V	V	R	N	A	R	F	F	L	R	D	G	G	Y	M	L	M	A	I	K	A	R	S	I	D	V	T	T	E	P	S	E	V	Y	K	R	E	I	K	T	L	M	D	G	G	L	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	T	T	T														T	T																															T	T																T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Sequence	I	K	D	V	V	H	L	D	P	F	D	R	D	H	A	M	I	Y	A	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T	T	S	T	T