PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4dcmA_

Fold library id	PDB Header	Molecule	Title
c4dcmA_	PDB header: transferase	Chain: A: PDB Molecule: ribosomal rna large subunit methyltransferase g;	PDBTitle: crystal structure of methyltransferase rlmg modifying g1835 of 23s2 rrna in escherichia coli

Links to external resources
Added to library: Sat Aug 4 13:57:36 2012

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence X R S L T L Q R F P A T D D V N P L Q A W E A A D E Y L L Q Q L D D T E I R G P V L I L N D A F G A L S C A L A E H K P Y S I G D S Y I S E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S
S S
S
S
T T T T
S
S S S T G G G
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L A T R E N L R L N G I D E S S V K F L D S T A D Y P Q Q P G V V L I K V P K T L A L L E Q Q L R A L R K V V T S D T R I I A G A K A R D I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
G G G S T T S
S S
S
S
T T
T T S G G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence H T S T L E L F E K V L G P T T T T L A W K K A R L I N C T F N E P Q L A D A P Q T V S W K L E G T D W T I H N H A N V F S R T G L D I G A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
B T T
S
T T T T
T T
T T
S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence R F F X Q H L P E N L E G E I V D L G C G N G V I G L T L L D K N P Q A K V V F V D E S P X A V A S S R L N V E T N X P E A L D R C E F X I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S
S T
T T
T T
S
G G G G G G

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence N N A L S G V E P F R F N A V L C N P P F D N V A W E X F H H A R R C L K I N G E L Y I V A N R H L D Y F H K L K K I F G N C T T I A T N N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T T T
T T
T T S
S
S

. . . . . . . . . 360

Sequence K F V V L K A V K L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	X	R	S	L	T	L	Q	R	F	P	A	T	D	D	V	N	P	L	Q	A	W	E	A	A	D	E	Y	L	L	Q	Q	L	D	D	T	E	I	R	G	P	V	L	I	L	N	D	A	F	G	A	L	S	C	A	L	A	E	H	K	P	Y	S	I	G	D	S	Y	I	S	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T						S	S				S	S		S			S											T	T	T	T					S								S	S	S						T	G	G	G							S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	A	T	R	E	N	L	R	L	N	G	I	D	E	S	S	V	K	F	L	D	S	T	A	D	Y	P	Q	Q	P	G	V	V	L	I	K	V	P	K	T	L	A	L	L	E	Q	Q	L	R	A	L	R	K	V	V	T	S	D	T	R	I	I	A	G	A	K	A	R	D	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T			G	G	G	S					T	T	S				S	S		S								S														T	T			T	T	S								G	G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	H	T	S	T	L	E	L	F	E	K	V	L	G	P	T	T	T	T	L	A	W	K	K	A	R	L	I	N	C	T	F	N	E	P	Q	L	A	D	A	P	Q	T	V	S	W	K	L	E	G	T	D	W	T	I	H	N	H	A	N	V	F	S	R	T	G	L	D	I	G	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T									B	T	T																		S							T	T	T	T							T	T		T	T		S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	R	F	F	X	Q	H	L	P	E	N	L	E	G	E	I	V	D	L	G	C	G	N	G	V	I	G	L	T	L	L	D	K	N	P	Q	A	K	V	V	F	V	D	E	S	P	X	A	V	A	S	S	R	L	N	V	E	T	N	X	P	E	A	L	D	R	C	E	F	X	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T				S			S						T		T	T												T	T								S																	G	G	G	G	G	G
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	N	N	A	L	S	G	V	E	P	F	R	F	N	A	V	L	C	N	P	P	F	D	N	V	A	W	E	X	F	H	H	A	R	R	C	L	K	I	N	G	E	L	Y	I	V	A	N	R	H	L	D	Y	F	H	K	L	K	K	I	F	G	N	C	T	T	I	A	T	N	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	T	T	T	T			T	T																																						T	T	S											S									S
	.	.	.	.	.	.	.	.	.	360
Sequence	K	F	V	V	L	K	A	V	K	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S