PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4dckA_

Fold library id	PDB Header	Molecule	Title
c4dckA_	PDB header: transport protein/signaling protein	Chain: A: PDB Molecule: sodium channel protein type 5 subunit alpha;	PDBTitle: crystal structure of the c-terminus of voltage-gated sodium channel in2 complex with fgf13 and cam

Links to external resources
Added to library: Sat Jun 30 13:37:58 2012

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S V A T E E S T E P L S E D D F D M F Y E I W E K F D P E A T Q F I E Y S V L S D F A D A L S E P L R I A K P N Q I S L I N M D L P M V S G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
T T
S S
B
T T
S G G G S
T T T
S S
S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D R I H C M D I L F A F T K R V L G E S G E M D A L K I Q M E E K F M A A N P S K I S Y E P I T T T L R R K H E E V S A M V I Q R A F R R H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
G G G

. . . . . . . . . 150 . . .

Sequence L L Q R S L K H A S F L F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	V	A	T	E	E	S	T	E	P	L	S	E	D	D	F	D	M	F	Y	E	I	W	E	K	F	D	P	E	A	T	Q	F	I	E	Y	S	V	L	S	D	F	A	D	A	L	S	E	P	L	R	I	A	K	P	N	Q	I	S	L	I	N	M	D	L	P	M	V	S	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		B			T	T		S	S		B																	T	T			S				G	G	G								S		T	T	T				S	S								S						T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	R	I	H	C	M	D	I	L	F	A	F	T	K	R	V	L	G	E	S	G	E	M	D	A	L	K	I	Q	M	E	E	K	F	M	A	A	N	P	S	K	I	S	Y	E	P	I	T	T	T	L	R	R	K	H	E	E	V	S	A	M	V	I	Q	R	A	F	R	R	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T																																								G	G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.
Sequence	L	L	Q	R	S	L	K	H	A	S	F	L	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T