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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c4d9jI_

Fold library idPDB HeaderMoleculeTitle
c4d9jI_PDB header: de novo proteinChain: I: PDB Molecule: designed 16nm tetrahedral protein cage containing non-haemPDBTitle: structure of a 16 nm protein cage designed by fusing symmetric2 oligomeric domains


Added to library: Sat Jun 23 13:41:23 2012
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence PFITVGQENSTSIDLYYEDHGTGVPVVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTG
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Known secondary structure (DSSP)



BTTB

SSSS

TT

GGGGT


TTSTTS


SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence YDYDTFAADLNTVLETLDLQDAVLVGFSMGTGEVARYVSSYGTARIAAVAFLASLEPFLLKTDDNPDGAA
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Known secondary structure (DSSP)
ST

STT
SSSS


S

B

SS
TT
SB
 .........150.........160.........170.........180.........190.........200.........210
Sequence PQEFFDGIVAAVKADRYAFYTGFFNDFYNLDENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDFR
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Known secondary structure (DSSP)

TTBTTTB
TS
TTGGGGTT


T
 .........220.........230.........240.........250.........260.........270.........280
Sequence ADIPRIDVPALILHGTGDRTLPIENTARVFHKALPSAEYVEVEGAPHGLLWTHAEEVNTALLAFLAKALE
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Known secondary structure (DSSP) TTGGG

S
TT
SSS
GGGT
TTSTT

TTTTTTTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence AQKQKLLTEVETYVLSIIPSGPLKAEIAQRLEDVFAGKNTDLEVLMEWLKTRPILSPLTKGILGFVFTLT
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Known secondary structure (DSSP) TTTS
SST



T
SSS
 .........360.........370.........380.........390.........400.........410.........420
Sequence VPSERGLQRRRFVQNALNGNGDPNNMDKAVKLYRKLKREITFHGAKEISLSYSAGALASCMGLIYNRMGA
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Known secondary structure (DSSP)
S

TT



SSS
TT
S

STTSS
TTS

 .........430........
Sequence VTTEVAFGLVCATCEQIA
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Known secondary structure (DSSP)




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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