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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4d25A_

Fold library idPDB HeaderMoleculeTitle
c4d25A_PDB header: hydrolaseChain: A: PDB Molecule: bmvlg protein;PDBTitle: crystal structure of the bombyx mori vasa helicase (e339q)2 in complex with rna and amppnp


Added to library: Sat Jun 21 10:54:56 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence YVPPEPTNDETEIFSSTISSGINFDKFDHIAVKVSGENPPRPIESFETANLRKYVLDNVLKAGYRKPTPI
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S



TTGGGGGGS
SSS




S
GGGS


TT

S

 .........80.........90.........100.........110.........120.........130.........140
Sequence QKNAIPIIMSGRDLMGCAQTGSGKTAAFLVPIINMLLQDPKDLISENGCAQPQVIIVSPTRELTLQIFNE
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Known secondary structure (DSSP) TT



TTS
S



TT
S
SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence ARKFSYGSVLKVAVAYGGTAVRHQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDQADCMLDM
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Known secondary structure (DSSP) TTTSS


TTS
T

S
TTSB
STT

TTST
 .........220.........230.........240.........250.........260.........270.........280
Sequence GFMPSIEKMMLHPTMVETTKRQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKY
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Known secondary structure (DSSP) TTT
TTS

GGGSS


GGG
SS
SSTT


TT

TT
 .........290.........300.........310.........320.........330.........340.........350
Sequence EKRNSLKQLIEENDGKRILVFVETKRNADFIAAMLSEQQLLTSSIHGDRMQREREEALQNFKSGKHCILV
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Known secondary structure (DSSP) TTTT


S
SS

TTS
SS
S
 .........360.........370.........380.........390.........400.........410.........420
Sequence ATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIGRTGRVGNRGKAVSFYDSDQDLALVADLSKILRQADQ
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Known secondary structure (DSSP)
GGGTSS


TT

SS

S
TTSS
TT


GGGTT
 .......
Sequence SVPDFLK
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Known secondary structure (DSSP)


GGG


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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