PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4d05A_

Fold library id	PDB Header	Molecule	Title
c4d05A_	PDB header: ligase	Chain: A: PDB Molecule: atp-dependent dna ligase;	PDBTitle: structure and activity of a minimal-type atp-dependent dna2 ligase from a psychrotolernt bacterium

Links to external resources
Added to library: Sat Nov 15 08:14:58 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G Q P P P I Q L A T N Y R Q D I D V T Q Y Y V S E K L D G I R A Y W N G H Q L I S K Q G N I F T A P T W F I A S F P T T A X D G E L W I A R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
G G G
S
S S
T T S
B
T T
S S
S T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Q Q F E T V S G I A R T Q D N Q N E Q W K Q I K F X I F D L P K S T V S F E Q R I N K X Q T L V T D T N S P Y L Q X I E Q Q K I P N T V A L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T
T T
G G G G G
T T
S
T T
B
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence F D L L N K V V X G K G E G L X L H H Q D A L Y Q T K R S R D L X K L K K F E D A E A T V I A Y L P G K G K Y E G L L G A I L V K N E E G V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T
S S
S
B
G G G B T S T T S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . .

Sequence T F K I G S G F S D E E R S T P P P I G S L I T Y R F T G K T N N N I P R F A S F V R I R V I Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S
T T
S B
G G G
B T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	Q	P	P	P	I	Q	L	A	T	N	Y	R	Q	D	I	D	V	T	Q	Y	Y	V	S	E	K	L	D	G	I	R	A	Y	W	N	G	H	Q	L	I	S	K	Q	G	N	I	F	T	A	P	T	W	F	I	A	S	F	P	T	T	A	X	D	G	E	L	W	I	A	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T	T	S		G	G	G									S							S	S					T	T	S		B									T	T			S	S									S	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Q	Q	F	E	T	V	S	G	I	A	R	T	Q	D	N	Q	N	E	Q	W	K	Q	I	K	F	X	I	F	D	L	P	K	S	T	V	S	F	E	Q	R	I	N	K	X	Q	T	L	V	T	D	T	N	S	P	Y	L	Q	X	I	E	Q	Q	K	I	P	N	T	V	A	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T										T				T	T		G	G	G	G	G									T	T			S																			T	T							B			S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	F	D	L	L	N	K	V	V	X	G	K	G	E	G	L	X	L	H	H	Q	D	A	L	Y	Q	T	K	R	S	R	D	L	X	K	L	K	K	F	E	D	A	E	A	T	V	I	A	Y	L	P	G	K	G	K	Y	E	G	L	L	G	A	I	L	V	K	N	E	E	G	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T									T	T					S	S										S														B		G	G	G	B	T	S									T	T	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Sequence	T	F	K	I	G	S	G	F	S	D	E	E	R	S	T	P	P	P	I	G	S	L	I	T	Y	R	F	T	G	K	T	N	N	N	I	P	R	F	A	S	F	V	R	I	R	V	I	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S	S								S				T	T									S	B		G	G	G		B	T	T