PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4cxfA_

Fold library id	PDB Header	Molecule	Title
c4cxfA_	PDB header: transcription	Chain: A: PDB Molecule: rna polymerase sigma factor cnrh;	PDBTitle: structure of cnrh in complex with the cytosolic domain of cnry

Links to external resources
Added to library: Sat May 3 08:37:28 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence D A D R I L A A Q A A S G N Q R A F G Q L V A R H G V A L A Q A A R S F G I P E T D V D D V V Q D T F V A A W H A L D D F D P D R P F R A W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T
G G G
T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L F R I G L N K M R D L Y R F R R A A R L E L A R V A S T L G K L D T G S R E V I V L T A I V G M S Q P E A A A V L G L S V K A V E G R I G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T S
T S
T

. . . . . . . . . 150 . . . .

Sequence R A R A K L S A L L D A D S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	D	A	D	R	I	L	A	A	Q	A	A	S	G	N	Q	R	A	F	G	Q	L	V	A	R	H	G	V	A	L	A	Q	A	A	R	S	F	G	I	P	E	T	D	V	D	D	V	V	Q	D	T	F	V	A	A	W	H	A	L	D	D	F	D	P	D	R	P	F	R	A	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T	T																							T	T																					G	G	G			T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	F	R	I	G	L	N	K	M	R	D	L	Y	R	F	R	R	A	A	R	L	E	L	A	R	V	A	S	T	L	G	K	L	D	T	G	S	R	E	V	I	V	L	T	A	I	V	G	M	S	Q	P	E	A	A	A	V	L	G	L	S	V	K	A	V	E	G	R	I	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T	T																T	T	S													T	S												T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Sequence	R	A	R	A	K	L	S	A	L	L	D	A	D	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)