PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4cwcC_

Fold library id	PDB Header	Molecule	Title
c4cwcC_	PDB header: isomerase	Chain: C: PDB Molecule: replication initiation protein, replication initiation	PDBTitle: structure of rolling circle replication initiator protein (2 repde) from staphylococcus aureus

Links to external resources
Added to library: Sat Apr 18 08:11:01 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence P Q P E L S F D A M T I V G N L N K T N A K K L S D F M S T E P Q I R L W D I L Q T K F K A K A L Q E K V Y I E Y D K V K A D S W D R R N M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S S
S S T T T T T T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence R V E F N P N K L T H E E M L W L K Q N I I D Y M E D D G F T R L D L A F D F E D D L S D Y Y A M T D K A V K K T I F Y G R N G K P E T K Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G
T G G G
S S
T T
S S
T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence F G V R D S D R F I R I Y N K K Q E R K D N A D V E V M S E H L W R V E I E L K R D M V D Y W N D C F N D L H I L K P D W S S L E K V K D Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S S S S T T
S S S
G G G G G G G G G
T T S
T G G G S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270

Sequence A M I Y M L I H E E S T W G K L E R R T K N K Y R E M L K S I S E I D L T D L M K L T L K E N E K Q L Q K Q I E F W Q R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G T T T S
T
T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	P	Q	P	E	L	S	F	D	A	M	T	I	V	G	N	L	N	K	T	N	A	K	K	L	S	D	F	M	S	T	E	P	Q	I	R	L	W	D	I	L	Q	T	K	F	K	A	K	A	L	Q	E	K	V	Y	I	E	Y	D	K	V	K	A	D	S	W	D	R	R	N	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																T	T	S				S			S	S							T	T	T	T													T	T			S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	R	V	E	F	N	P	N	K	L	T	H	E	E	M	L	W	L	K	Q	N	I	I	D	Y	M	E	D	D	G	F	T	R	L	D	L	A	F	D	F	E	D	D	L	S	D	Y	Y	A	M	T	D	K	A	V	K	K	T	I	F	Y	G	R	N	G	K	P	E	T	K	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						G	G	G													T	G	G	G																S	S			T	T						S	S										T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	F	G	V	R	D	S	D	R	F	I	R	I	Y	N	K	K	Q	E	R	K	D	N	A	D	V	E	V	M	S	E	H	L	W	R	V	E	I	E	L	K	R	D	M	V	D	Y	W	N	D	C	F	N	D	L	H	I	L	K	P	D	W	S	S	L	E	K	V	K	D	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S		S	S	S	S															T	T					S	S	S											G	G	G	G	G	G	G	G	G		T	T	S							T	G	G	G	S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Sequence	A	M	I	Y	M	L	I	H	E	E	S	T	W	G	K	L	E	R	R	T	K	N	K	Y	R	E	M	L	K	S	I	S	E	I	D	L	T	D	L	M	K	L	T	L	K	E	N	E	K	Q	L	Q	K	Q	I	E	F	W	Q	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										G	G	G	T	T	T	S														T						T