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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4cvkA_

Fold library idPDB HeaderMoleculeTitle
c4cvkA_PDB header: ligaseChain: A: PDB Molecule: udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alaninePDBTitle: pamurf in complex with udp-murnac-tripeptide (mdap)


Added to library: Sat Apr 25 08:46:17 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MLEPLRLSQLTVALDARLIGEDAVFSAVSTDSRAIGPGELFIALSGPRFDGHDYLAEVAAKGAVAALVER
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Known secondary structure (DSSP)

S
GGGST
SS

SS
TTS

TT

B
SS
BGGGGTT

SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence EVAAPLPQLLVRDTRAALGRLGALNRRKFTGPLAAMTGSSGKTTVKEMLASILRTQAGDAESVLATRGNL
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Known secondary structure (DSSP)




S

S


S
SSTT
GGG

TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence NNDLGVPLTLLQLAPQHRSAVIELGASRIGEIAYTVELTRPHVAIITNAFGGPEKIVEAKGEILEGLAAD
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Known secondary structure (DSSP)
STTT

TT
S


SSTT

S




SGGGGGS
TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence GTAVLNLDDKAFDTWKARASGRPLLTFSLDRPQADFRAADLQRDARGCMGFRLQGVAGEAQVQLNLLGRH
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Known secondary structure (DSSP)
TTSTTTTT

SS
TTSS
TTS
TT


SS

 .........290.........300.........310.........320.........330.........340.........350
Sequence NVANALAAAAAAHALGVPLDGIVAGLQALQPVKGRAVAQLTASGLRVIDDSYNANPASMLAAIDILSGFS
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Known secondary structure (DSSP) TT





TTSS
TTS

S


T

 .........360.........370.........380.........390.........400.........410.........420
Sequence GRTVLVLGDMGAEQAHREVGAYAAGKVSALYAVGPLMAHAVQAFGATGRHFADQASLIGALATEDPTTTI
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Known secondary structure (DSSP) S




TTTSSSST
TT
SSTT

TT
 .........430.........
Sequence LIKGSRSAAMDKVVAALCA
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Known secondary structure (DSSP)

GGG
T


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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