PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4ct7A_

Fold library id	PDB Header	Molecule	Title
c4ct7A_	PDB header: transcription	Chain: A: PDB Molecule: ccr4-not transcription complex subunit 1;	PDBTitle: cnot9-cnot1 complex with bound tryptophan

Links to external resources
Added to library: Sat May 10 08:16:39 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence P P Q P Q Y S Y H D I N V Y S L A G L A P H I T L N P T I P L F Q A H P Q L K Q C V R Q A I E R A V Q E L V H P V V D R S I K I A M T T C E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T S S
S S G G G G G G G
T T
G G G G G G

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Q I V R K D F A L D S E E S R M R I A A H H M M R N L T A G M A M I T C R E P L L M S I S T N L K N S F A S A L R T A S P Q Q R E M M D Q A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
S S
S
T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A A Q L A Q D N C E L A C C F I Q K T A V E K A G P E M D K R L A T E F E L R K H A R Q E G R R Y C D P V V L T Y Q A E R M P E Q I R L K V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T S
S
T T T
T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . .

Sequence G G V D P K Q L A V Y E E F A R N V P G F L P T N D L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
G G G G
T T S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	P	P	Q	P	Q	Y	S	Y	H	D	I	N	V	Y	S	L	A	G	L	A	P	H	I	T	L	N	P	T	I	P	L	F	Q	A	H	P	Q	L	K	Q	C	V	R	Q	A	I	E	R	A	V	Q	E	L	V	H	P	V	V	D	R	S	I	K	I	A	M	T	T	C	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S			T	T	S	S			S	S	G	G	G	G	G	G	G					T	T								G	G	G	G	G	G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Q	I	V	R	K	D	F	A	L	D	S	E	E	S	R	M	R	I	A	A	H	H	M	M	R	N	L	T	A	G	M	A	M	I	T	C	R	E	P	L	L	M	S	I	S	T	N	L	K	N	S	F	A	S	A	L	R	T	A	S	P	Q	Q	R	E	M	M	D	Q	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T	T				S																																											S		S			T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	A	Q	L	A	Q	D	N	C	E	L	A	C	C	F	I	Q	K	T	A	V	E	K	A	G	P	E	M	D	K	R	L	A	T	E	F	E	L	R	K	H	A	R	Q	E	G	R	R	Y	C	D	P	V	V	L	T	Y	Q	A	E	R	M	P	E	Q	I	R	L	K	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																T													T	T	S															S		T	T	T				T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Sequence	G	G	V	D	P	K	Q	L	A	V	Y	E	E	F	A	R	N	V	P	G	F	L	P	T	N	D	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T				G	G	G	G											T	T	S