Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4ct4C_

Fold library idPDB HeaderMoleculeTitle
c4ct4C_PDB header: rna binding proteinChain: C: PDB Molecule: ccr4-not transcription complex subunit 1;PDBTitle: cnot1 mif4g domain - ddx6 complex


Added to library: Sat May 10 08:16:59 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SINTTNIDTLLVATDQTERIVEPPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKR
Predicted secondary structure























SS confidence





































































Known secondary structure (DSSP)


SS

TTS








TTTTTS
GGGT
 .........80.........90.........100.........110.........120.........130.........140
Sequence VSIEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKNK
Predicted secondary structure

















SS confidence





































































Known secondary structure (DSSP) TTT
GGGT
S
STT

TTTGGGT
 .........150.........160.........170.........180.........190.........200.........210
Sequence PILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVFRPPNPWTMAIMNVLAELHQEHDLKLN
Predicted secondary structure


























SS confidence





































































Known secondary structure (DSSP)


TTT


GGGG
TTTSTT
TT
TTS
 .........220.........230.........240..
Sequence LKFEIEVLCKNLALDINELKPGNLLKDKDRLK
Predicted secondary structure














SS confidence































Known secondary structure (DSSP) TT

GGG



SSTT


S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D