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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4ct4B_

Fold library idPDB HeaderMoleculeTitle
c4ct4B_PDB header: rna binding proteinChain: B: PDB Molecule: probable atp-dependent rna helicase ddx6;PDBTitle: cnot1 mif4g domain - ddx6 complex


Added to library: Sat May 10 11:07:16 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence RSMGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK
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Known secondary structure (DSSP)



SSGGGG


TT

S

TT



SSGGG

TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence KDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIK
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Known secondary structure (DSSP)

S


SSTTTSSS


TTS
TTS

S
 .........150.........160.........170.........180.........190.........200.........210
Sequence KGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLM
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Known secondary structure (DSSP) TTSS

TT

STSTTTTTS
TT
S



SS


 .........220.........230.........240.........250.........260.........270.........280
Sequence EELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQE
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Known secondary structure (DSSP)


B
TT


GGGS

S
SSTT


TTS
 .........290.........300.........310.........320.........330.........340.........350
Sequence HRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYD
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Known secondary structure (DSSP) TTS
S
TT


GGG
TTSS

S

B
BTTB

S
GG
 .........360.........370........
Sequence DRFNLKSIEEQLGTEIKPIPSNIDKSLY
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Known secondary structure (DSSP) GTT




TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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