PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4csoD_

Fold library id	PDB Header	Molecule	Title
c4csoD_	PDB header: transcription	Chain: D: PDB Molecule: orfy protein, transcription factor;	PDBTitle: the structure of orfy from thermoproteus tenax

Links to external resources
Added to library: Sat Mar 22 08:12:55 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence D L D S K A K S P F V F K S A Y Y L S L Y T K R R A R N L R Q L A E G I R A A D P G V I F H H V F H V V F A K H L L H P Y Y T N D F A R W V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S
T G G G S S S S
B T T B
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G E E L N D D D L A I E L S S I S G A E P A T V E D V R R E L L A V L E P R A D E R A A R R E F V F V S M V P I V Y E V G L K A E T L A E F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T
T T
T T T
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L D A V A A A P P E S V A Y H F V T A R V L Y G N G R N D F S R W L V E E F G L T S A A D A L S R I D P L I Y N D E R Q L K S E V V R T L E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T T S S S
T
G G G
S S

. . . . .

Sequence R A D S A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	D	L	D	S	K	A	K	S	P	F	V	F	K	S	A	Y	Y	L	S	L	Y	T	K	R	R	A	R	N	L	R	Q	L	A	E	G	I	R	A	A	D	P	G	V	I	F	H	H	V	F	H	V	V	F	A	K	H	L	L	H	P	Y	Y	T	N	D	F	A	R	W	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T																								S	S																					T	G	G	G	S	S	S	S			B	T	T	B		S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	E	E	L	N	D	D	D	L	A	I	E	L	S	S	I	S	G	A	E	P	A	T	V	E	D	V	R	R	E	L	L	A	V	L	E	P	R	A	D	E	R	A	A	R	R	E	F	V	F	V	S	M	V	P	I	V	Y	E	V	G	L	K	A	E	T	L	A	E	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S											T					T	T															T	T	T							S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	D	A	V	A	A	A	P	P	E	S	V	A	Y	H	F	V	T	A	R	V	L	Y	G	N	G	R	N	D	F	S	R	W	L	V	E	E	F	G	L	T	S	A	A	D	A	L	S	R	I	D	P	L	I	Y	N	D	E	R	Q	L	K	S	E	V	V	R	T	L	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S										T					T	T	S	S	S																							T			G	G	G		S	S
	.	.	.	.	.
Sequence	R	A	D	S	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T