PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4cekA_

Fold library id	PDB Header	Molecule	Title
c4cekA_	PDB header: transcription	Chain: A: PDB Molecule: regulator of nonsense transcripts 2;	PDBTitle: crystal structure of the second mif4g domain of human2 nonsense mediated decay factor upf2

Links to external resources
Added to library: Sat Jan 11 09:13:09 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G I W E D E D A R N F Y E N L I D L K A F V P A T L E L G D E A E D L T K K L L D E Q S T G S H L K L I V D A F L Q Q L P N C V N R D L I D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
G G G S
G G G
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence K A A M D F C M N M N T K A N R K K L V R A L F I V P R Q R L D L L P F Y A R L V A T L H P C M S D V A E D L C S M L R G D F R F H V R K K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T
G G G G G G T T T
T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I N I E T K N K T V R F I G E L T K F K M F T K N D T L H C L K M L L S D F S H H H I E M A C T L L E T C G R F L F R S P E S H L R T S V L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S S
S
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240

Sequence L E Q M M R K K Q A M H L D A R Y V T M V E N A Y Y Y C N P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	I	W	E	D	E	D	A	R	N	F	Y	E	N	L	I	D	L	K	A	F	V	P	A	T	L	E	L	G	D	E	A	E	D	L	T	K	K	L	L	D	E	Q	S	T	G	S	H	L	K	L	I	V	D	A	F	L	Q	Q	L	P	N	C	V	N	R	D	L	I	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S	S												G	G	G	S																																							G	G	G			S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	K	A	A	M	D	F	C	M	N	M	N	T	K	A	N	R	K	K	L	V	R	A	L	F	I	V	P	R	Q	R	L	D	L	L	P	F	Y	A	R	L	V	A	T	L	H	P	C	M	S	D	V	A	E	D	L	C	S	M	L	R	G	D	F	R	F	H	V	R	K	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T															T			G	G	G	G	G	G												T	T	T		T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	N	I	E	T	K	N	K	T	V	R	F	I	G	E	L	T	K	F	K	M	F	T	K	N	D	T	L	H	C	L	K	M	L	L	S	D	F	S	H	H	H	I	E	M	A	C	T	L	L	E	T	C	G	R	F	L	F	R	S	P	E	S	H	L	R	T	S	V	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																			T	T	S	S															S																							S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence	L	E	Q	M	M	R	K	K	Q	A	M	H	L	D	A	R	Y	V	T	M	V	E	N	A	Y	Y	Y	C	N	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T