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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4cc9A_

Fold library idPDB HeaderMoleculeTitle
c4cc9A_PDB header: protein bindingChain: A: PDB Molecule: protein vprbp;PDBTitle: crystal structure of human samhd1 (amino acid residues 582-2 626) bound to vpx isolated from sooty mangabey and human3 dcaf1 (amino acid residues 1058-1396)


Added to library: Sat Jan 11 10:09:00 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence RHLIFSRFRPISVFREANEDESGFTCCAFSARERFLMLGTCTGQLKLYNVFSGQEEASYNCHNSAITHLE
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Known secondary structure (DSSP)
TTGGG


TT
SS
B
TTSSTTSTTT



SS


 .........80.........90.........100.........110.........120.........130.........140
Sequence PSRDGSLLLTSATWSQPLSALWGMKSVFDMKHSFTEDHYVEFSKHSQDRVIGTKGDIAHIYDIQTGNKLL
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Known secondary structure (DSSP)
TTSS
SSSSS
SSSTT
S
SSS
STTTTT

 .........150.........160.........170.........180.........190.........200.........210
Sequence TLFNPDLANNYKRNCATFNPTDDLVLNDGVLWDVRSAQAIHKFDKFNMNISGVFHPNGLEVIINTEIWDL
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Known secondary structure (DSSP)

TTT



TT



TTSSTTTTTT




SS



TTSSTTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence RTFHLLHTVPALDQCRVVFNHTGTVMYGAMLQSPFGSSFRTFNATDYKPIATIDVKRNIFDLCTDTKDCY
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Known secondary structure (DSSP) TT


GGGTT
TTSS


TTT


SS
SSS
 .........290.........300.......
Sequence LAVIENQGSMDALNMDTVCRLYEVGRQ
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Known secondary structure (DSSP) TTTTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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