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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4cbmA_

Fold library idPDB HeaderMoleculeTitle
c4cbmA_PDB header: hydrolaseChain: A: PDB Molecule: serine protease ns3;PDBTitle: pestivirus ns3 helicase


Added to library: Sat Jan 24 08:25:06 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence DLTEMVKKITTMNRGEFRQITLGKTTELPRSVIEEIGRHKRVLVLIPLRAAAESVYQYMRQKHPSIAFNL
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Known secondary structure (DSSP)


TT



TT
TTS
S

TTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence RIGEMKEGDMATGITYASYGYFCQMSQPKLRAAMVEYSFIFLDEYHCATPEQLAIMGKIHRFSENLRVVA
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Known secondary structure (DSSP) SSS

TT



SGGGGGGS
TT
STGGG

TTGGG

 .........150.........160.........170.........180.........190.........200.........210
Sequence MTATHPIEEFIAPEVMKGEDLGSEYLDIAGLKIPVEEMKNNMLVFVPTRNMAVEAAKKLKAKGYNSYSGE
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Known secondary structure (DSSP)





B

SS


TTTTTGGGGGS

SSTT




S
 .........220.........230.........240.........250.........260.........270.........280
Sequence DPTSQSPYVVVATNAIESGVTLPDLDVVVDTGLKCEKRIRLSPKMPFIVTGLKRMAVTIGEQAQRRGRVG
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Known secondary structure (DSSP)



SSS

GGGTSS


TT


S
SSSSS

TTSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence RVKPGRYYRSQETPVSKDYHYDLLQAQRYGIEDGINITKSFREMNYDWSLYEEDSLMITQLEILNNLLIS
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Known secondary structure (DSSP) SSS

S







GGGGTTTT



S


TS
 .........360.........370.........380.........390.........400.........410.........420
Sequence EELPMAVKNIMARTDHPEPIKLAYNSYETQVPVLFPKIRNGEVTDTYDNYTFLNARKLGDDVPPYVYATE
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Known secondary structure (DSSP) S





S
TTTT
SS



TT
S




TT



TT




S
 .........430.........440.........450...
Sequence DEDLAVELLGLDWPDPGNQGTVEAGRALKQVVG
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Known secondary structure (DSSP) TT






S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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