PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4c5lC_

Fold library id	PDB Header	Molecule	Title
c4c5lC_	PDB header: transferase	Chain: C: PDB Molecule: phosphomethylpyrimidine kinase;	PDBTitle: structure of the pyridoxal kinase from staphylococcus2 aureus in complex with pyridoxal

Links to external resources
Added to library: Sat Mar 22 08:18:41 2014

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G A L K K V L T I A G S D T S A G A G M Q A D L K T F Q E L D T Y G M V A L T A I V T M D K D T W S H D V T P L P M D V F E K Q L E T A L S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S S S T T
T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence I G P D A I K T G M L G T E E I I K R A G E V Y E A S N A Q Y F V V D P V M V C K G N P G N T E A M I K Y L L P K A T V V T P N L F E A G Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S
S
T G G G
S
B

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L S G L G K L N S I E D M K K A A T I I F D K G A Q H V I I K G G K A L D Q D K S Y D L Y Y D G Q T F Y Q L T T D M F Q Y N H G A G C T F A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S T T
S
S S
S S
B T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . .

Sequence A A T T A Y L A N G K S P K E A V I S A K A F V A S A I K N G W K M N D F V G P V D H G A Y N R I E H I D V E V T E V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T
S S S
B
T T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	A	L	K	K	V	L	T	I	A	G	S	D	T	S	A	G	A	G	M	Q	A	D	L	K	T	F	Q	E	L	D	T	Y	G	M	V	A	L	T	A	I	V	T	M	D	K	D	T	W	S	H	D	V	T	P	L	P	M	D	V	F	E	K	Q	L	E	T	A	L	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T	T	S	S	S												T	T															T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	I	G	P	D	A	I	K	T	G	M	L	G	T	E	E	I	I	K	R	A	G	E	V	Y	E	A	S	N	A	Q	Y	F	V	V	D	P	V	M	V	C	K	G	N	P	G	N	T	E	A	M	I	K	Y	L	L	P	K	A	T	V	V	T	P	N	L	F	E	A	G	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S									S														S			S																								T	G	G	G		S					B
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	S	G	L	G	K	L	N	S	I	E	D	M	K	K	A	A	T	I	I	F	D	K	G	A	Q	H	V	I	I	K	G	G	K	A	L	D	Q	D	K	S	Y	D	L	Y	Y	D	G	Q	T	F	Y	Q	L	T	T	D	M	F	Q	Y	N	H	G	A	G	C	T	F	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T						S														T	T		S												S	S									S	S														B	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Sequence	A	A	T	T	A	Y	L	A	N	G	K	S	P	K	E	A	V	I	S	A	K	A	F	V	A	S	A	I	K	N	G	W	K	M	N	D	F	V	G	P	V	D	H	G	A	Y	N	R	I	E	H	I	D	V	E	V	T	E	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T																				T					S	S	S			B			T	T					T